View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2565_high_5 (Length: 239)

Name: NF2565_high_5
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2565_high_5
NF2565_high_5
[»] chr7 (6 HSPs)
chr7 (14-167)||(307120-307273)
chr7 (14-119)||(2826893-2826998)
chr7 (77-119)||(39719824-39719866)
chr7 (77-119)||(46211836-46211878)
chr7 (77-119)||(48609265-48609307)
chr7 (77-119)||(758774-758816)
[»] scaffold0049 (1 HSPs)
scaffold0049 (19-119)||(15216-15318)
[»] chr4 (2 HSPs)
chr4 (19-119)||(13768742-13768844)
chr4 (77-118)||(43892682-43892723)
[»] chr2 (1 HSPs)
chr2 (19-119)||(5382424-5382526)
[»] chr5 (3 HSPs)
chr5 (37-119)||(39685447-39685531)
chr5 (77-119)||(13517442-13517484)
chr5 (77-119)||(17769136-17769178)
[»] chr8 (2 HSPs)
chr8 (77-119)||(4072387-4072429)
chr8 (77-119)||(41323341-41323383)
[»] chr6 (2 HSPs)
chr6 (77-119)||(29363704-29363746)
chr6 (77-119)||(34729719-34729761)
[»] chr3 (3 HSPs)
chr3 (77-119)||(46823748-46823790)
chr3 (78-119)||(17653148-17653189)
chr3 (77-119)||(21295876-21295918)
[»] chr1 (2 HSPs)
chr1 (77-119)||(10620007-10620049)
chr1 (77-119)||(15757620-15757662)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 307120 - 307273
Alignment:
Q  14 tactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307120 tactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctac 307219  T
Q  114 aattgttattaactgttattaactgaatcttcatacatatctgggttataagta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307220 aattgttattaactgttattaactgaatcttcatacatatctgggttataagta 307273  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 2826998 - 2826893
Alignment:
Q  14 tactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2826998 tactctgtaattgtattgtgatcgtgaaaagtgaaaggttaaagccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtaggcctac 2826899  T
Q  114 aattgt 119  Q
    ||||||    
T  2826898 aattgt 2826893  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 39719866 - 39719824
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  39719866 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 39719824  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 46211836 - 46211878
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  46211836 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 46211878  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 48609265 - 48609307
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  48609265 tgtgtggtgctggtgggttgagagtgtgtgagcctacaattgt 48609307  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 758816 - 758774
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||    
T  758816 tgtgttgtgctggtgggctgagagtgtgtgggcctacatttgt 758774  T

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Target: scaffold0049 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 15318 - 15216
Alignment:
Q  19 tgtaattgtattgtgatcgtgaaaagtgaaaggttaaa--gccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctacaat 116  Q
    ||||||||||||||||| ||||||||||||| ||||||  | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15318 tgtaattgtattgtgattgtgaaaagtgaaaagttaaaaagtcatccttgttttattaattgtgtggtgctggtgggctgagagtgtgtgggcctacaat 15219  T
Q  117 tgt 119  Q
    |||    
T  15218 tgt 15216  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 13768844 - 13768742
Alignment:
Q  19 tgtaattgtattgtgatcgtgaaaagtgaaaggttaaa--gccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctacaat 116  Q
    ||||||||||||||||| ||||||||| ||| ||||||  |||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  13768844 tgtaattgtattgtgattgtgaaaagtaaaaagttaaaaagccatccttgttttattaattgtgtggtgcttgtgggctgagagtgtgtggacctacaat 13768745  T
Q  117 tgt 119  Q
    |||    
T  13768744 tgt 13768742  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 43892682 - 43892723
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattg 118  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||    
T  43892682 tgtgtggtgctggtgggctgagaatgtatgggcctacaattg 43892723  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 5382424 - 5382526
Alignment:
Q  19 tgtaattgtattgtgatcgtgaaaagtgaaaggttaaa--gccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctacaat 116  Q
    ||||||||||||||||| ||||||| ||||| ||||||  | |||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  5382424 tgtaattgtattgtgattgtgaaaaatgaaaagttaaaaagtcatccttgttttattaattgtgtgatgctggtgggctgagagtgtgtgagcctacaat 5382523  T
Q  117 tgt 119  Q
    |||    
T  5382524 tgt 5382526  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 39685447 - 39685531
Alignment:
Q  37 gtgaaaagtgaaaggttaaa--gccatcattgttttattaattgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||| ||||||  | |||| |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  39685447 gtgaaaagtgaaaagttaaaaagtcatccttgttttattaattgtgtggtgctggtgggctgagagtttgtgggtctacaattgt 39685531  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 13517484 - 13517442
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  13517484 tgtgtggtgctggtgggctgagagtgtgtggacctacaattgt 13517442  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 17769136 - 17769178
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  17769136 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 17769178  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 4072387 - 4072429
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  4072387 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 4072429  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 41323341 - 41323383
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  41323341 tgtgtggtgctggtgggctgagagtgtgtggacctacaattgt 41323383  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 29363704 - 29363746
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  29363704 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 29363746  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 34729761 - 34729719
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  34729761 tgtgtggtgctggtgggttgagagtgtgtgagcctacaattgt 34729719  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 46823790 - 46823748
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  46823790 tgtgtggtgctggtgggctgagagtgtgtgggcctacaattgt 46823748  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 17653148 - 17653189
Alignment:
Q  78 gtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  17653148 gtgtggtgctggtgggttgaaagtgtgtgggcctacaattgt 17653189  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 21295918 - 21295876
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  21295918 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 21295876  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 10620049 - 10620007
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  10620049 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 10620007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 15757662 - 15757620
Alignment:
Q  77 tgtgtggtgctggtgggttgagagtgtgtgggcctacaattgt 119  Q
    ||||||||||||||||| |||||| ||||||||||||||||||    
T  15757662 tgtgtggtgctggtgggctgagagcgtgtgggcctacaattgt 15757620  T

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