View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2565_low_1 (Length: 531)
Name: NF2565_low_1
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2565_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 47334363 - 47334017
Alignment:
| Q |
19 |
cacagatatagtaatgagtaccagttttgttaagtgttactctcactggtgggttgctgaaagttgcaattggagaagctgagttgcatgaatcatactt |
118 |
Q |
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| T |
47334363 |
cacagatatagtaatgagtaccagttttgttaagtgttactctcactggtgggttgctgaaagttgcaattggagaagttgagttgcatgaatcatactt |
47334264 |
T |
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| Q |
119 |
ttcctttgtcacttcttccacgttgtgtgcattcaattggaaattgaaaactgcatcataatacaagttgatcaataatttgcctcacaaaattatacat |
218 |
Q |
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| T |
47334263 |
ttcctttgtcacttcttccacgttgtgtgcattcaattggaaattgaaaactgcatcataatacaagttgatcaataatttgcctcacaaaattatacat |
47334164 |
T |
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| Q |
219 |
ctaaatcatatttccacaacaattttagacacctaaattcaacaactggttaatgcatttcacacacacttttaaagcaaatagttgatgagtatatcaa |
318 |
Q |
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| T |
47334163 |
ctaaatcatatttccacaacaattttagacacctaaattcaacaactggttaatgcatttcacacacacttttaaagcaaatagttgatgagtatatcaa |
47334064 |
T |
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| Q |
319 |
tcaagagatcagatatctcattaccatgtattgaattttattaatca |
365 |
Q |
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| T |
47334063 |
tcaagagatcagatatctcattaccatgtattgaattttattaatca |
47334017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 47334006 - 47333957
Alignment:
| Q |
465 |
cctcttgtgtgaaaatcactgtatgatatgatctattttcctattattca |
514 |
Q |
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| T |
47334006 |
cctcttgtgtgaaaatcactgtatgatatgatctattttcctattattca |
47333957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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