View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2565_low_2 (Length: 426)

Name: NF2565_low_2
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2565_low_2
NF2565_low_2
[»] chr6 (31 HSPs)
chr6 (20-414)||(4563437-4563832)
chr6 (180-414)||(4592118-4592352)
chr6 (16-154)||(4591978-4592116)
chr6 (290-414)||(4585633-4585757)
chr6 (276-413)||(4579414-4579552)
chr6 (290-414)||(4560503-4560627)
chr6 (290-414)||(4613729-4613853)
chr6 (290-414)||(4557122-4557246)
chr6 (293-414)||(4480693-4480814)
chr6 (291-384)||(4570970-4571063)
chr6 (290-414)||(4574305-4574429)
chr6 (299-414)||(4504408-4504523)
chr6 (290-414)||(4598168-4598292)
chr6 (293-400)||(4617022-4617129)
chr6 (296-414)||(3171744-3171862)
chr6 (293-388)||(4492955-4493050)
chr6 (105-235)||(4613888-4614019)
chr6 (293-414)||(4516321-4516442)
chr6 (296-388)||(4267203-4267295)
chr6 (299-414)||(4490366-4490481)
chr6 (293-344)||(4515202-4515253)
chr6 (293-412)||(4601789-4601908)
chr6 (290-349)||(4606967-4607026)
chr6 (297-399)||(4392052-4392154)
chr6 (296-414)||(4622145-4622263)
chr6 (293-414)||(4461123-4461244)
chr6 (293-354)||(4505857-4505918)
chr6 (296-414)||(4625954-4626072)
chr6 (296-349)||(4299816-4299869)
chr6 (299-388)||(4469809-4469898)
chr6 (312-383)||(4568072-4568143)
[»] chr8 (3 HSPs)
chr8 (293-414)||(1674226-1674347)
chr8 (290-400)||(20863868-20863978)
chr8 (290-360)||(16686332-16686402)
[»] scaffold0477 (1 HSPs)
scaffold0477 (296-410)||(4701-4815)
[»] chr5 (2 HSPs)
chr5 (293-414)||(28000110-28000231)
chr5 (296-388)||(24103002-24103094)
[»] scaffold0288 (1 HSPs)
scaffold0288 (296-414)||(3730-3848)
[»] chr3 (1 HSPs)
chr3 (293-414)||(1281114-1281235)
[»] chr7 (1 HSPs)
chr7 (299-388)||(3086426-3086515)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 4563437 - 4563832
Alignment:
Q  20 acatgataatgagattcaagatactgtgaaagaattctcattccctctactttacatatt-aaagtggtaggattcatattataaagttaatatacatgc 118  Q
    |||||||||||  ||||||||||||||||||||||||| |||| | | |||| ||||||| ||| | |||||||| ||||||||||||||||||||||||    
T  4563437 acatgataatggaattcaagatactgtgaaagaattcttattcacccaacttaacatatttaaacttgtaggatttatattataaagttaatatacatgc 4563536  T
Q  119 catataattatccaatatgcatatattcaaaacatttaaaattagcaagaatcactatttaagttcaggaactcttgctgaagatgacttcacttacatc 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4563537 catataattatccaatatgcatatattcaaaacacttaaaattagcaagaatcactatttaagttcaggaactcttgctgaagatgacttcacttacatc 4563636  T
Q  219 agaacttaaattcaataggggaagatcaatgacttatcgttgaactgaattgcataaaaaagttacttaaattgattttgtttaagcaaaacctccttga 318  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4563637 agaacttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaagttacttaaattgattttgtttaagcaaaacctccttga 4563736  T
Q  319 tcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttttgtcgcatcttctttc 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  4563737 tcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgccgcatcttctttc 4563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 180 - 414
Target Start/End: Original strand, 4592118 - 4592352
Alignment:
Q  180 agttcaggaactcttgctgaagatgacttcacttacatcagaacttaaattcaataggggaagatcaatgacttatcgttgaactgaattgcataaaaaa 279  Q
    |||| ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| | |||| |||||||||  ||||||||||||    
T  4592118 agtttaggaactcttgctgaagatgagttcacttacatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa 4592217  T
Q  280 gttacttaaatt-gattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttct 378  Q
     ||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||    
T  4592218 -ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttct 4592316  T
Q  379 tcttcaactcaattgccttttgtcgcatcttctttc 414  Q
    |||||||||| ||||||||||  | |||||||||||    
T  4592317 tcttcaactcgattgcctttttcctcatcttctttc 4592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 4591978 - 4592116
Alignment:
Q  16 atgaacatgataatgagattcaagatactgtgaaagaattctcattccctctactttacatattaaagtggtaggattcatattataaagttaatataca 115  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4591978 atgaacatgataatgaaattcaagataccgtgaaagaattcttattccctctactttacatattaaaatggtaggattcatattataaagttaatataca 4592077  T
Q  116 tgccatataattatccaatatgcatatattcaaaacatt 154  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4592078 tgccatataattatccaatatgcatatattcaaaacatt 4592116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 290 - 414
Target Start/End: Original strand, 4585633 - 4585757
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    |||||||| |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||     
T  4585633 ttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcg 4585732  T
Q  390 attgccttttgtcgcatcttctttc 414  Q
    ||||||||||| | |||||||||||    
T  4585733 attgccttttgcctcatcttctttc 4585757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 413
Target Start/End: Original strand, 4579414 - 4579552
Alignment:
Q  276 aaaagttacttaaatt-gattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgct 374  Q
    |||||| |||||| || |||||||||| || || |||||||| |||||||| |||||||||||||||||||| ||||||| |||||||| ||||||| |     
T  4579414 aaaagtcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacc 4579513  T
Q  375 ttcttcttcaactcaattgccttttgtcgcatcttcttt 413  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  4579514 ttcttcttcaactcaattgccttttgcctcatcttcttt 4579552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 290 - 414
Target Start/End: Original strand, 4560503 - 4560627
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||| | ||||||| || ||||||| |||     
T  4560503 ttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctcc 4560602  T
Q  390 attgccttttgtcgcatcttctttc 414  Q
    || |||||||| | |||||||||||    
T  4560603 atggccttttgcctcatcttctttc 4560627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 4613853 - 4613729
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    |||||||||||| ||||  ||||| ||||||||||||||||||||||| |||||||||||||| | |||||||| |||||| || |||||||||||||||    
T  4613853 ttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactca 4613754  T
Q  390 attgccttttgtcgcatcttctttc 414  Q
    ||||||||||| | ||| |||||||    
T  4613753 attgccttttgcctcattttctttc 4613729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 290 - 414
Target Start/End: Original strand, 4557122 - 4557246
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||| |||||||| ||||||||| ||| |||||| ||||    
T  4557122 ttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctca 4557221  T
Q  390 attgccttttgtcgcatcttctttc 414  Q
    |||  |||||  | |||||||||||    
T  4557222 attatctttttccacatcttctttc 4557246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 4480693 - 4480814
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||| |||| |||||| ||  ||||||||||||| ||     
T  4480693 attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg 4480792  T
Q  393 gccttttgtcgcatcttctttc 414  Q
    ||||||||   |||||||||||    
T  4480793 gccttttgcttcatcttctttc 4480814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 4570970 - 4571063
Alignment:
Q  291 tgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttca 384  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||| ||||||||||    
T  4570970 tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttca 4571063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 414
Target Start/End: Original strand, 4574305 - 4574429
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||  |||||||||||||||||| |||||||| | ||||| | |||||||||| ||||    
T  4574305 ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca 4574404  T
Q  390 attgccttttgtcgcatcttctttc 414  Q
    || || ||||| | |||||||||||    
T  4574405 atggctttttgcctcatcttctttc 4574429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 414
Target Start/End: Complemental strand, 4504523 - 4504408
Alignment:
Q  299 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttt 398  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||| |||  ||| |||| |||||| || |||||||||||||| || ||||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt 4504424  T
Q  399 tgtcgcatcttctttc 414  Q
    || | |||||||||||    
T  4504423 tgcctcatcttctttc 4504408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 414
Target Start/End: Original strand, 4598168 - 4598292
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    |||||| |||||||| || |||||||| |||||||| || ||||||||||||||||||||||||  |||||| | ||||||||| ||| ||||||| |||    
T  4598168 ttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatca 4598267  T
Q  390 attgccttttgtcgcatcttctttc 414  Q
    |||| |||||| | ||| |||||||    
T  4598268 attgtcttttgcctcattttctttc 4598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 4617022 - 4617129
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||||||| || ||||| || ||||||| ||||||||||||||||||||| || | ||| ||||||||||| || |||||||||||||| ||     
T  4617022 attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg 4617121  T
Q  393 gccttttg 400  Q
    ||||||||    
T  4617122 gccttttg 4617129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 414
Target Start/End: Original strand, 3171744 - 3171862
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 395  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||  ||| || | |||||| || |||||||||||||| || |||    
T  3171744 ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggcc 3171843  T
Q  396 ttttgtcgcatcttctttc 414  Q
     |||| | |||||||||||    
T  3171844 ctttgcctcatcttctttc 3171862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 388
Target Start/End: Original strand, 4492955 - 4493050
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 388  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |   |||| |||||| || ||||| ||||||||    
T  4492955 attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactc 4493050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 4614019 - 4613888
Alignment:
Q  105 gttaatatacatgccatataattatccaatatgcatatattcaaaacatttaaaattagcaagaatcacta-tttaagttcaggaactcttgctgaagat 203  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||| |||| || || ||||||||||  || |||||||| |  | ||||||||||||||    
T  4614019 gttaatatacctgctatataattatccaatgtgcatatattcaaaccattcaagataagcaagaatcgttattttaagtttaccatctcttgctgaagat 4613920  T
Q  204 gacttcacttacatcagaacttaaattcaata 235  Q
     | |||| ||||||||  ||||||||||||||    
T  4613919 cagttcatttacatcatcacttaaattcaata 4613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 4516321 - 4516442
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||| ||||  |||||||| |||||||| ||||||||||  ||||||||||| || | ||| |||| |||||| || ||||||||||| || ||     
T  4516321 attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatg 4516420  T
Q  393 gccttttgtcgcatcttctttc 414  Q
    |||||||| | |||||||||||    
T  4516421 gccttttgcctcatcttctttc 4516442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 388
Target Start/End: Complemental strand, 4267295 - 4267203
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 388  Q
    |||||||||||  |||||||| || |||||||||||||||||||||||| |||| |||| ||| |||||||| || || ||| ||||||||||    
T  4267295 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactc 4267203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 414
Target Start/End: Complemental strand, 4490481 - 4490366
Alignment:
Q  299 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgccttt 398  Q
    ||||||||  || ||||| |||||||||||||||||||||||||||| ||| ||   |||||||| |||| | || ||||||||||||||  | ||||||    
T  4490481 tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt 4490382  T
Q  399 tgtcgcatcttctttc 414  Q
    || | |||||||||||    
T  4490381 tgcctcatcttctttc 4490366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 4515253 - 4515202
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaa 344  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4515253 attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 412
Target Start/End: Original strand, 4601789 - 4601908
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||||||| |||||||| || |||||||||| |||| ||||||||||||| ||   ||| ||| ||||||  ||  ||||||||||||| ||     
T  4601789 attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg 4601888  T
Q  393 gccttttgtcgcatcttctt 412  Q
    |||||||| | |||||||||    
T  4601889 gccttttgcctcatcttctt 4601908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 4607026 - 4606967
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacc 349  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||    
T  4607026 ttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaacc 4606967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 4392154 - 4392052
Alignment:
Q  297 tgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcct 396  Q
    ||||||||||| |||||||| |||| |||||||||||||||| ||||| |||| |||| ||  |||| |||||  || |||||||||||||| || ||||    
T  4392154 tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcct 4392055  T
Q  397 ttt 399  Q
    |||    
T  4392054 ttt 4392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 414
Target Start/End: Original strand, 4622145 - 4622263
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 395  Q
    |||||||||||  |||||||| || ||||||||||||||  ||||||||||||| ||||  || ||  |||| || || |||| ||||||||| || |||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc 4622244  T
Q  396 ttttgtcgcatcttctttc 414  Q
    ||||||| |||||||||||    
T  4622245 ttttgtctcatcttctttc 4622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 4461123 - 4461244
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||||||| || ||||| || ||||||||||||||| ||||||||  |||||||| ||| || | ||||||| | |||||||| || || ||     
T  4461123 attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg 4461222  T
Q  393 gccttttgtcgcatcttctttc 414  Q
     ||||||| | |||||||||||    
T  4461223 accttttgcctcatcttctttc 4461244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 4505857 - 4505918
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccag 354  Q
    ||||||||||||||| |||||||| || |||||||||||||||||| |||||||||| ||||    
T  4505857 attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccag 4505918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 414
Target Start/End: Original strand, 4625954 - 4626072
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 395  Q
    |||||||||||| || || || |||| ||| ||||  ||||||||||||||||| || |  ||  |||||||||| || |||||||||||||| || |||    
T  4625954 ttgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggcc 4626053  T
Q  396 ttttgtcgcatcttctttc 414  Q
    ||||| | |||||||||||    
T  4626054 ttttgcctcatcttctttc 4626072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 4299869 - 4299816
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacc 349  Q
    ||||||||||| ||||||||| || |||||||||||||||||||| ||||||||    
T  4299869 ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaacc 4299816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 4469809 - 4469898
Alignment:
Q  299 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 388  Q
    ||||||||| || ||||| || ||||||||||||||| ||||||||  |||||||| ||| || | ||||||| | |||||||| |||||    
T  4469809 tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactc 4469898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 4568072 - 4568143
Alignment:
Q  312 tccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttc 383  Q
    ||||| ||||||||||||||||||||||||||| || | |||| ||| |||| || ||| || |||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttc 4568143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 1674226 - 1674347
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || | ||| ||||||||||| || ||||||||||| || ||     
T  1674226 attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg 1674325  T
Q  393 gccttttgtcgcatcttctttc 414  Q
    |||||||| | |||||| ||||    
T  1674326 gccttttgcctcatcttttttc 1674347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 20863978 - 20863868
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactca 389  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||| | | ||| |||| |||||| || |||||||||||||||    
T  20863978 ttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactca 20863879  T
Q  390 attgccttttg 400  Q
     ||| ||||||    
T  20863878 tttgtcttttg 20863868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16686402 - 16686332
Alignment:
Q  290 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcg 360  Q
    ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| |||||    
T  16686402 ttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcg 16686332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 4815 - 4701
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 395  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||||| || ||||  || ||||||||||| || |||||||||||||| || |||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggcc 4716  T
Q  396 ttttgtcgcatcttc 410  Q
    ||||| | |||||||    
T  4715 ttttgcctcatcttc 4701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 414
Target Start/End: Complemental strand, 28000231 - 28000110
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||| || | ||| ||||||||||| || || ||||||||||| ||     
T  28000231 attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg 28000132  T
Q  393 gccttttgtcgcatcttctttc 414  Q
    |||||||| | |||||| ||||    
T  28000131 gccttttgcctcatcttttttc 28000110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 388
Target Start/End: Original strand, 24103002 - 24103094
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 388  Q
    |||||||||||  |||||||| || |||||||||||||||||||||||| |||| |||| ||| |||||||| || || |||||||| |||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactc 24103094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 414
Target Start/End: Complemental strand, 3848 - 3730
Alignment:
Q  296 ttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaattgcc 395  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||| ||| || | ||| ||||||||||| || |||||||| ||||| |  |||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc 3749  T
Q  396 ttttgtcgcatcttctttc 414  Q
    ||||| | |||||||||||    
T  3748 ttttgcctcatcttctttc 3730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 1281114 - 1281235
Alignment:
Q  293 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactcaatt 392  Q
    ||||||||||||||| |  ||||| ||||||||||| |||||||||||||||||||| || | ||| ||||||||||||||   ||||||||| || ||     
T  1281114 attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg 1281213  T
Q  393 gccttttgtcgcatcttctttc 414  Q
    ||||||| || ||| |||||||    
T  1281214 gccttttctctcatattctttc 1281235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 3086426 - 3086515
Alignment:
Q  299 tttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttctcctccgctttcttcttcaactc 388  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||||| ||    || |||||||| || ||||||||||| |||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactc 3086515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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