View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2565_low_3 (Length: 414)

Name: NF2565_low_3
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2565_low_3
NF2565_low_3
[»] chr3 (17 HSPs)
chr3 (301-397)||(44308256-44308352)
chr3 (208-292)||(44312441-44312525)
chr3 (40-108)||(44312646-44312714)
chr3 (1-63)||(3034370-3034432)
chr3 (1-63)||(8070406-8070468)
chr3 (1-63)||(8883897-8883959)
chr3 (1-63)||(8888657-8888719)
chr3 (1-63)||(14425158-14425219)
chr3 (3-63)||(12899048-12899108)
chr3 (1-63)||(16023259-16023321)
chr3 (1-63)||(47541213-47541275)
chr3 (1-57)||(3673313-3673369)
chr3 (1-57)||(3693345-3693401)
chr3 (304-362)||(20496183-20496241)
chr3 (268-353)||(8884262-8884347)
chr3 (268-353)||(8889008-8889093)
chr3 (3-84)||(53502421-53502501)
[»] chr7 (21 HSPs)
chr7 (270-387)||(1044345-1044462)
chr7 (3-63)||(10488602-10488662)
chr7 (1-63)||(15565641-15565703)
chr7 (1-63)||(27256964-27257026)
chr7 (1-61)||(9650267-9650327)
chr7 (1-47)||(7838810-7838856)
chr7 (5-63)||(7838857-7838915)
chr7 (1-63)||(8954582-8954643)
chr7 (282-383)||(9649850-9649949)
chr7 (281-353)||(11060258-11060330)
chr7 (1-84)||(1043989-1044071)
chr7 (1-63)||(8076777-8076840)
chr7 (28-63)||(18385244-18385279)
chr7 (1-63)||(11247704-11247766)
chr7 (1-63)||(11289356-11289418)
chr7 (3-61)||(19096975-19097032)
chr7 (1-63)||(19641026-19641088)
chr7 (10-63)||(11289292-11289345)
chr7 (3-48)||(40864683-40864728)
chr7 (3-63)||(29727106-29727165)
chr7 (3-63)||(36477690-36477749)
[»] chr6 (5 HSPs)
chr6 (1-63)||(28964129-28964190)
chr6 (1-62)||(15645418-15645479)
chr6 (3-63)||(16625136-16625195)
chr6 (1-63)||(6112064-6112126)
chr6 (3-63)||(26981315-26981374)
[»] chr5 (17 HSPs)
chr5 (1-63)||(562194-562256)
chr5 (1-63)||(557422-557484)
chr5 (1-63)||(21826941-21827002)
chr5 (1-63)||(26869629-26869690)
chr5 (1-63)||(36936816-36936878)
chr5 (1-63)||(36941570-36941632)
chr5 (1-63)||(23976891-23976954)
chr5 (1-63)||(32460849-32460911)
chr5 (1-63)||(41997391-41997453)
chr5 (1-63)||(42002160-42002222)
chr5 (268-353)||(41997734-41997819)
chr5 (268-353)||(42002525-42002610)
chr5 (5-63)||(1429481-1429538)
chr5 (272-330)||(21322977-21323035)
chr5 (268-330)||(32460485-32460547)
chr5 (1-63)||(41099248-41099309)
chr5 (268-328)||(36949779-36949839)
[»] chr4 (16 HSPs)
chr4 (272-315)||(39320660-39320703)
chr4 (1-63)||(13521290-13521352)
chr4 (1-63)||(34561151-34561213)
chr4 (3-63)||(9184999-9185058)
chr4 (3-63)||(15225885-15225944)
chr4 (282-383)||(13520875-13520974)
chr4 (1-63)||(31297799-31297861)
chr4 (272-353)||(34561503-34561584)
chr4 (3-63)||(9190864-9190923)
chr4 (268-360)||(31297436-31297527)
chr4 (1-63)||(47575388-47575451)
chr4 (272-330)||(3992709-3992767)
chr4 (1-63)||(41817522-41817584)
chr4 (1-63)||(43477300-43477360)
chr4 (298-330)||(7899894-7899926)
chr4 (274-354)||(41817883-41817963)
[»] chr8 (14 HSPs)
chr8 (1-63)||(4237646-4237708)
chr8 (1-63)||(4242385-4242447)
chr8 (1-63)||(22104393-22104454)
chr8 (3-63)||(19393046-19393105)
chr8 (1-60)||(29220807-29220866)
chr8 (1-63)||(10933967-10934029)
chr8 (1-63)||(31449170-31449232)
chr8 (268-353)||(31448782-31448867)
chr8 (3-63)||(43301991-43302049)
chr8 (3-63)||(8330668-8330728)
chr8 (1-63)||(25367292-25367353)
chr8 (1-63)||(34818011-34818073)
chr8 (268-330)||(43301684-43301746)
chr8 (1-57)||(15197556-15197612)
[»] chr1 (14 HSPs)
chr1 (1-63)||(3094816-3094878)
chr1 (9-84)||(23285127-23285199)
chr1 (268-362)||(23254114-23254208)
chr1 (1-63)||(26199076-26199137)
chr1 (1-63)||(27308194-27308255)
chr1 (3-63)||(14819692-14819751)
chr1 (1-63)||(2384561-2384622)
chr1 (1-63)||(17213749-17213811)
chr1 (1-63)||(22428511-22428572)
chr1 (3-60)||(19725215-19725271)
chr1 (1-49)||(8267171-8267219)
chr1 (3-63)||(14804224-14804283)
chr1 (28-84)||(26199214-26199269)
chr1 (1-45)||(40232711-40232755)
[»] scaffold0132 (1 HSPs)
scaffold0132 (3-63)||(24611-24670)
[»] scaffold0041 (1 HSPs)
scaffold0041 (3-63)||(35009-35069)
[»] scaffold0070 (2 HSPs)
scaffold0070 (1-63)||(59153-59214)
scaffold0070 (1-63)||(63355-63416)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-63)||(546-607)
[»] chr2 (8 HSPs)
chr2 (1-63)||(28855857-28855918)
chr2 (1-63)||(30658898-30658960)
chr2 (1-61)||(22845129-22845188)
chr2 (1-63)||(6297199-6297260)
chr2 (1-63)||(7559656-7559717)
chr2 (1-63)||(17452892-17452953)
chr2 (9-57)||(38426831-38426880)
chr2 (1-61)||(13290872-13290932)
[»] scaffold0019 (1 HSPs)
scaffold0019 (6-63)||(30407-30463)
[»] scaffold0327 (1 HSPs)
scaffold0327 (3-63)||(19537-19596)
[»] scaffold0045 (1 HSPs)
scaffold0045 (268-383)||(84000-84114)
[»] scaffold0131 (1 HSPs)
scaffold0131 (269-331)||(8645-8707)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-63)||(193582-193643)
[»] scaffold0628 (1 HSPs)
scaffold0628 (270-335)||(7528-7593)
[»] scaffold0182 (1 HSPs)
scaffold0182 (268-353)||(8799-8884)
[»] scaffold0061 (1 HSPs)
scaffold0061 (272-329)||(48899-48956)
[»] scaffold0017 (1 HSPs)
scaffold0017 (272-329)||(149678-149735)
[»] scaffold0478 (1 HSPs)
scaffold0478 (1-57)||(8314-8369)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 301 - 397
Target Start/End: Complemental strand, 44308352 - 44308256
Alignment:
Q  301 cttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaattcccaatttccacacttgtttcaataagatgtct 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44308352 cttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaattcccaattttcacacttgtttcaataagatgtct 44308256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 44312525 - 44312441
Alignment:
Q  208 ttcgttcacaaaagatatgcaactttcttagaggtgcacccccaaaatataaattacatcaatgtgtgtgatctatccaatgtag 292  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  44312525 ttcgttcataaaaggtatgcaactttcttagaggtgcacccccaaaatataaataccatcaatgtgtgtgatctacccaatgtag 44312441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 44312714 - 44312646
Alignment:
Q  40 tcatattgattaccaaaatatattcttattgagtgccaaaatatagtgaaatacggtgattaaggaaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  44312714 tcatattgattaccaaaatatattcttattgagtgccaaaatatagtgaaatacactgattaagaaaac 44312646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3034370 - 3034432
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  3034370 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 3034432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8070406 - 8070468
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  8070406 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 8070468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8883897 - 8883959
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  8883897 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 8883959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8888657 - 8888719
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  8888657 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 8888719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14425219 - 14425158
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  14425219 tctagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 14425158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 12899108 - 12899048
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||| | || ||||||||||||| |||| ||| ||||||||||    
T  12899108 tagtacaaaaatatctcaaattgagtatcaaaatatatcatgttgactacaaaaatatatt 12899048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16023259 - 16023321
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||| ||||||||||||| | |||||||||| |||||||||  ||| ||||||||||    
T  16023259 tctagtacaacaatatctcaaattaagtaccaaaataaatcatattgcatacaaaaatatatt 16023321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47541275 - 47541213
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | ||| ||| ||||||||||||| | | ||||||||||    
T  47541275 tctagtacaaaaatatctcaaattgagtacaaaagtatatcatattgagtgcaaaaatatatt 47541213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3673313 - 3673369
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaa 57  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||    
T  3673313 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaa 3673369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3693345 - 3693401
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaa 57  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||    
T  3693345 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaa 3693401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 20496241 - 20496183
Alignment:
Q  304 ttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaa 362  Q
    ||||||||| |||||| |||||||||| | ||||| ||||||||||||||  |||||||    
T  20496241 ttttcaatttacaccacactagttctacctaatatgggactttgtgtttagtcttttaa 20496183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 8884262 - 8884347
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    |||||||||| || |||| |||| | ||| ||| |||||||||||||||| | |||||||||| | || || ||| ||||||||||    
T  8884262 aatgtgtgtgttccatccgatgtgggacttccatttttttcaattcacacaacactagttctacccaacatgggaatttgtgttta 8884347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 8889008 - 8889093
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    |||||||||| || |||| |||| | ||| |||||||||||||||||||| | |||| ||||| | || || ||| ||||||||||    
T  8889008 aatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactaattctacccaacatgggaatttgtgttta 8889093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 53502501 - 53502421
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatattcttattgagtgccaaaatata 84  Q
    |||||||||||||||||||||| | | |||||||||||| ||| || ||| ||| ||||||  |||| ||| ||||||||||    
T  53502501 tagtacaaaaatatctcaaattgagtgccaaaatatatcctatcgagtacaaaagtatatt-atatttagtaccaaaatata 53502421  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 387
Target Start/End: Original strand, 1044345 - 1044462
Alignment:
Q  270 tgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaattcccaa 369  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||   ||| |  ||| |||||||||  ||||||| || |||    
T  1044345 tgtgtgtgatctatccaatgtaggactttcacttttttcaattcacaccacactagttctagacaatgtgagacattgtgtttagtcttttaactctcaa 1044444  T
Q  370 tttccacacttgtttcaa 387  Q
    ||||||||| ||||||||    
T  1044445 tttccacacatgtttcaa 1044462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 10488662 - 10488602
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||| ||| ||||||||||    
T  10488662 tagtagaaaaatatctcaaattgagtaccaaaatatatcatattgagtacaaaaatatatt 10488602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15565641 - 15565703
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| |  || ||||||||||    
T  15565641 tctagtacaaaaatatctcaaattgagtaccaaaatatatcatattaagaacaaaaatatatt 15565703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27256964 - 27257026
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  27256964 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 27257026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9650327 - 9650267
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatata 61  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||    
T  9650327 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatata 9650267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7838810 - 7838856
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattg 47  Q
    |||||||||||||||||||||||| | ||||||| ||||||||||||    
T  7838810 tctagtacaaaaatatctcaaattgagtaccaaattatatcatattg 7838856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 7838857 - 7838915
Alignment:
Q  5 gtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||| ||||| | ||||||||||||||||||||  ||| ||||||||||    
T  7838857 gtacaaaaatatcttaaattgagtaccaaaatatatcatattggatacaaaaatatatt 7838915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8954643 - 8954582
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||| |||| || | ||||||||||||||||||||| ||| ||||||||||    
T  8954643 tctagtacaaaaatatgtcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 8954582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 9649949 - 9649850
Alignment:
Q  282 atccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaattcccaatttccacacttg 381  Q
    |||| |||| ||||| |||||||||||||||||||| | |||||||||| | || || ||| ||||||||||  |||||||  | |||||||||||| ||    
T  9649949 atccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtcttttaa--ctcaatttccacacatg 9649852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 11060258 - 11060330
Alignment:
Q  281 tatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    ||||||||||  |||| ||||| |||||||||||||| | |||||||||||| ||| | ||||||||| ||||    
T  11060258 tatccaatgtgaaacttccactattttcaattcacacaacactagttctatctaatgtgggactttgtattta 11060330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1043989 - 1044071
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatattcttattgagtgccaaaatata 84  Q
    |||||||||||||||| ||| ||| | |||||||| |||| ||||||| | | ||||||||||  |||||||| ||||||||||    
T  1043989 tctagtacaaaaatatttcatattgagtaccaaaagatattatattgagtgcaaaaatatatt-atattgagtaccaaaatata 1044071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8076777 - 8076840
Alignment:
Q  1 tctagtacaaaa-atatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||| |||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  8076777 tctagtacaaaaaatatctcaaattgagtttcaaaatatatcatattgagtacaaaaatatatt 8076840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 18385244 - 18385279
Alignment:
Q  28 taccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18385244 taccaaaatatatcatattgattacaaaaatatatt 18385279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11247766 - 11247704
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||| |||||||| || | ||||||| || ||||||| ||| ||||||||||    
T  11247766 tctagtacaaaaataactcaaattgaaaatcaaaatagattatattgagtacaaaaatatatt 11247704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 11289418 - 11289356
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||| |||||||  ||||  ||||||||| ||||||| ||| ||||||||||    
T  11289418 tctagtacaaaaataactcaaatcgaatataaaaatatattatattgagtacaaaaatatatt 11289356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 19096975 - 19097032
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatata 61  Q
    ||||||||||||||||||| || | || |||||||||||||||||| ||| ||||||||    
T  19096975 tagtacaaaaatatctcaa-ttgagtatcaaaatatatcatattgagtacaaaaatata 19097032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19641026 - 19641088
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||| |||||| ||||||| | || |||||||||||||||||| | | ||||||||||    
T  19641026 tctagtacacaaatatttcaaattaagtatcaaaatatatcatattgagtccaaaaatatatt 19641088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 11289345 - 11289292
Alignment:
Q  10 aaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||   ||||||||||||| ||||||| ||| ||||||||||    
T  11289345 aaaatatctcaaattaggtaccaaaatatattatattgactacaaaaatatatt 11289292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 40864728 - 40864683
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattga 48  Q
    |||||||||||||||||||||| | |  ||||||||||||||||||    
T  40864728 tagtacaaaaatatctcaaattgagtctcaaaatatatcatattga 40864683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 29727165 - 29727106
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||| |||| || | ||||||||||||| ||||||| ||| ||||||||||    
T  29727165 tagtacaaaaatatttcaa-ttgagtaccaaaatatattatattgagtacaaaaatatatt 29727106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 36477690 - 36477749
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||| ||| | |  ||||||||||||||||||||| ||| ||||||||||    
T  36477690 tagtacaaaaatatcacaattgtg-taccaaaatatatcatattgagtacaaaaatatatt 36477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28964190 - 28964129
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||    
T  28964190 tctagtacaaaaatatctcaaattgagtaccaaaatatatcatattgagta-caaaatatatt 28964129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15645418 - 15645479
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatat 62  Q
    |||||||||||||||||| | ||| | |||||||||||||||||||| |||| |||||||||    
T  15645418 tctagtacaaaaatatcttacattgagtaccaaaatatatcatattgtttacaaaaatatat 15645479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 16625136 - 16625195
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  16625136 tagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 16625195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6112126 - 6112064
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  ||||||| |||||||||| ||| ||||||||||    
T  6112126 tctagtacaaaaatatctcaaattgattctcaaaatagatcatattgagtacaaaaatatatt 6112064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 26981315 - 26981374
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||| ||||||||||||||||| ||| ||||||||||    
T  26981315 tagtacaaaaatatctcaa-ttgagtactaaaatatatcatattgagtacaaaaatatatt 26981374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 562194 - 562256
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||||||||||||||    
T  562194 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtaccaaaatatatt 562256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 557422 - 557484
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  557422 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 557484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21826941 - 21827002
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  21826941 tctagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 21827002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26869690 - 26869629
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  26869690 tctagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 26869629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36936878 - 36936816
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  36936878 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 36936816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36941632 - 36941570
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  36941632 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 36941570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23976954 - 23976891
Alignment:
Q  1 tctagtacaaaaatatct-caaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||| |||||| | || |||||||||||||||||| ||| ||||||||||    
T  23976954 tctagtacaaaaatatcttcaaattgagtatcaaaatatatcatattgagtacaaaaatatatt 23976891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32460911 - 32460849
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  ||||||||||||||||||  || ||||||||||    
T  32460911 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagaacaaaaatatatt 32460849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41997391 - 41997453
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||| ||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  41997391 tctaatacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 41997453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42002160 - 42002222
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||| ||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  42002160 tctaatacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 42002222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 41997734 - 41997819
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    |||||||||| || |||| |||| | ||| |||||||||||||||||||| | |||||||||| | || || ||| ||||||||||    
T  41997734 aatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgttta 41997819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 42002525 - 42002610
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    |||||||||| || |||| |||| | ||| |||||||||||||||||||| | |||||||||| | || ||| || ||||||||||    
T  42002525 aatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatatgaatttgtgttta 42002610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 1429538 - 1429481
Alignment:
Q  5 gtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||| || | ||||||||||||| ||||||| ||| ||||||||||    
T  1429538 gtacaaaaatatctcaa-ttgagtaccaaaatatattatattgaatacaaaaatatatt 1429481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 21323035 - 21322977
Alignment:
Q  272 tgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttcta 330  Q
    ||||||||| |||| |||| | ||| |||||||||||||||||||| | ||||||||||    
T  21323035 tgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttcta 21322977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 32460547 - 32460485
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttcta 330  Q
    |||||||||| || |||| |||| | ||| |||||||||||||||||||| | ||||||||||    
T  32460547 aatgtgtgtgttccatccgatgtggtacttccacttttttcaattcacacaacactagttcta 32460485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41099248 - 41099309
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||| |||| | |  ||||||||||||||||||||| ||| ||||||||||    
T  41099248 tctagtacaaaaatatgtcaattgtc-taccaaaatatatcatattgagtacaaaaatatatt 41099309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 36949779 - 36949839
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttc 328  Q
    |||||||| |||| |||| |||| | ||| |||||||||||||||||||| | ||||||||    
T  36949779 aatgtgtgggatccatccgatgtgggacttccacttttttcaattcacactacactagttc 36949839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 39320660 - 39320703
Alignment:
Q  272 tgtgtgatctatccaatgtagaactaccacttttttcaattcac 315  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  39320660 tgtgtgatctatccaatgtagaacttccacttttttcaattcac 39320703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13521352 - 13521290
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  13521352 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 13521290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34561151 - 34561213
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  34561151 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 34561213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 9185058 - 9184999
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  9185058 tagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacgaaaatatatt 9184999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 15225885 - 15225944
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  15225885 tagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 15225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 13520974 - 13520875
Alignment:
Q  282 atccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaattcccaatttccacacttg 381  Q
    |||| |||| ||||| |||||||||||||||||||| | |||||||||| | || || ||| ||||||||||  |||||||  | |||||||||||| ||    
T  13520974 atccgatgtggaacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgtttagtcttttaa--ctcaatttccacacatg 13520877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31297861 - 31297799
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||| ||||| ||| ||||||||||    
T  31297861 tctagtacaaaaatatctcaaattgagtctcaaaatatatcacattgagtacaaaaatatatt 31297799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 34561503 - 34561584
Alignment:
Q  272 tgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    ||||||||| |||| | || | ||| |||||||||||||||||||| |||||| ||||| | | ||||||| ||||||||||    
T  34561503 tgtgtgatccatccgacgtgggacttccacttttttcaattcacactatactaattctacccattataggaatttgtgttta 34561584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 9190923 - 9190864
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||| ||||||||||| ||| ||||||||||    
T  9190923 tagtacaaaaatatctcaa-ttgagtaccaaaatgtatcatattgagtacgaaaatatatt 9190864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 360
Target Start/End: Complemental strand, 31297527 - 31297436
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaacctttt 360  Q
    |||||||||| || |||| |||||||||| ||||||||| |||||||||| | |||||||||| | || ||  || |||||||||| ||||||    
T  31297527 aatgtgtgtgttccatccgatgtagaacttccacttttt-caattcacacaacactagttctacccaacatgagaatttgtgtttagcctttt 31297436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47575388 - 47575451
Alignment:
Q  1 tctagtacaaaa-atatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||| |||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  47575388 tctagtacaaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 47575451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 3992767 - 3992709
Alignment:
Q  272 tgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttcta 330  Q
    ||||||||| |||| |||| | ||| |||| ||||||||||||||||| ||||||||||    
T  3992767 tgtgtgatccatccgatgtgggacttccacctttttcaattcacaccacactagttcta 3992709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41817522 - 41817584
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||| |||||||||  | |  |||||||||||||||||| ||| ||||||||||    
T  41817522 tctagtacaaaaacatctcaaatcgagtctcaaaatatatcatattgagtacaaaaatatatt 41817584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43477360 - 43477300
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| |||| ||||||||||||||  ||||||| || |||||||||||    
T  43477360 tctagtacaaaaatatctc-aattgaataccaaaatatactatattgagta-caaaatatatt 43477300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 7899926 - 7899894
Alignment:
Q  298 ccacttttttcaattcacaccatactagttcta 330  Q
    |||||||||||||||||||||| ||||||||||    
T  7899926 ccacttttttcaattcacaccacactagttcta 7899894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 354
Target Start/End: Original strand, 41817883 - 41817963
Alignment:
Q  274 tgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaa 354  Q
    ||||||| |||| |||| ||||| |||||||||||||||||||| | | || ||||| | | | ||||| |||||||||||    
T  41817883 tgtgatccatccgatgtggaacttccacttttttcaattcacactacattaattctacccattgtaggaatttgtgtttaa 41817963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4237708 - 4237646
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  4237708 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 4237646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4242447 - 4242385
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  4242447 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 4242385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22104393 - 22104454
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  22104393 tctagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 22104454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 19393105 - 19393046
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  19393105 tagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 19393046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29220807 - 29220866
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatat 60  Q
    |||||||||||||||||||||||  | ||||||| ||||||||||||| ||| |||||||    
T  29220807 tctagtacaaaaatatctcaaatcaagtaccaaagtatatcatattgaatacaaaaatat 29220866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10933967 - 10934029
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||| ||||| | | ||||||||| ||||||||| ||| ||||||||||    
T  10933967 tctagtacaaaaatatcttaaattgagtgccaaaatatgtcatattgagtacaaaaatatatt 10934029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31449232 - 31449170
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  ||||||||||||||| || ||| ||||||||||    
T  31449232 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatatcgagtacaaaaatatatt 31449170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 31448867 - 31448782
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    |||||||||| || |||| |||| | ||| |||||||||||||||||||| | |||||||||| | || || ||| ||||||||||    
T  31448867 aatgtgtgtgttccatccgatgtgggacttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgttta 31448782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 43302049 - 43301991
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  43302049 tagtacaaaaatatctcaaattgagt--caaaatatatcatattgagtacaaaaatatatt 43301991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 8330728 - 8330668
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||| | |  ||||||||||| |||||| ||| ||||||||||    
T  8330728 tagtacaaaaatatctcaaattgagtctcaaaatatatcttattgagtacaaaaatatatt 8330668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25367353 - 25367292
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||| ||||||| || |||||||||||    
T  25367353 tctagtacaaaaatatctcaaattgagtctcaaaatatataatattgagta-caaaatatatt 25367292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34818073 - 34818011
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||| |||||||||| | |  ||||||||||| |||||| ||| ||||||||||    
T  34818073 tctagtacaaaaacatctcaaattgagtctcaaaatatatcttattgagtacaaaaatatatt 34818011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 43301746 - 43301684
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttcta 330  Q
    ||||| |||| || |||| |||||| ||| |||||||||||||||||||| | ||||||||||    
T  43301746 aatgtatgtgttccatccgatgtaggacttccacttttttcaattcacacaacactagttcta 43301684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15197556 - 15197612
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaa 57  Q
    |||| ||||||||||||||| ||| ||||| ||||||| ||| ||||| ||||||||    
T  15197556 tctattacaaaaatatctcatattaaatacaaaaatatttcaaattgagtaccaaaa 15197612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3094816 - 3094878
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  3094816 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 3094878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 23285199 - 23285127
Alignment:
Q  9 aaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatattcttattgagtgccaaaatata 84  Q
    |||||||||||||||| | ||||||||||||||||||||| ||| ||||||   | ||||||||||| ||||||||    
T  23285199 aaaaatatctcaaattgagtaccaaaatatatcatattgagtacaaaaata---ttttattgagtgcaaaaatata 23285127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 23254208 - 23254114
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaa 362  Q
    ||||||||||||||||||||| | | ||| ||||| |||||||||||||| | ||||||| |||| |||  || | ||||||||||  |||||||    
T  23254208 aatgtgtgtgatctatccaatttgggacttccactcttttcaattcacacaagactagttttatccaatgaagaaatttgtgtttactcttttaa 23254114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26199076 - 26199137
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||| |||  |||||||||    
T  26199076 tctagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacagaaatatatt 26199137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27308255 - 27308194
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||| |||||||||| | |||||||||||||||||||   ||||||||||||||    
T  27308255 tctagtacaaaaacatctcaaattgagtaccaaaatatatcatatt-cgtaccaaaatatatt 27308194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 14819692 - 14819751
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| ||  ||||||||||    
T  14819692 tagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtataaaaatatatt 14819751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2384622 - 2384561
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||| |||| | |  ||||||||||||||||||||| ||| ||||||||||    
T  2384622 tctagtacaaaaatatgtcaattgtt-taccaaaatatatcatattgagtacaaaaatatatt 2384561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17213811 - 17213749
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||| |||||||||||||||||||   || ||||||||||| |||||| ||| ||||||||||    
T  17213811 tctaatacaaaaatatctcaaattgtgtatcaaaatatatcttattgagtacaaaaatatatt 17213749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22428572 - 22428511
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||| ||| | |  ||||||||||||||||||||| ||| ||||||||||    
T  22428572 tctagtacaaaaatatcccaattgtc-taccaaaatatatcatattgagtacaaaaatatatt 22428511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 19725271 - 19725215
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatat 60  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||| ||| |||||||    
T  19725271 tagtacaaaaatatctcaattgtg-taccaaaatatatcatattgagtacaaaaatat 19725215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8267219 - 8267171
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgat 49  Q
    |||||||||||||||||| ||||| | |  |||||||||||||||||||    
T  8267219 tctagtacaaaaatatctaaaattgagtctcaaaatatatcatattgat 8267171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 14804224 - 14804283
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||| |||| || | ||||||||||| ||||||||| ||| ||||||||||    
T  14804224 tagtacaaaaatatttcaa-ttgagtaccaaaatatttcatattgagtacaaaaatatatt 14804283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 26199214 - 26199269
Alignment:
Q  28 taccaaaatatatcatattgattaccaaaatatattcttattgagtgccaaaatata 84  Q
    ||||||||||||||||||||| ||| |||||||| || |||||||| | ||||||||    
T  26199214 taccaaaatatatcatattgagtacaaaaatata-tcatattgagtacaaaaatata 26199269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40232755 - 40232711
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatat 45  Q
    ||||||||||||||||||||||||   || |||||||||||||||    
T  40232755 tctagtacaaaaatatctcaaattgtgtatcaaaatatatcatat 40232711  T

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Target: scaffold0132 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 24670 - 24611
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  24670 tagtacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 24611  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 35069 - 35009
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||    
T  35069 tagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtacaaaaatatatt 35009  T

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Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 59153 - 59214
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| || |||||||||||    
T  59153 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagta-caaaatatatt 59214  T

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Target: scaffold0070; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 63355 - 63416
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| || |||||||||||    
T  63355 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagta-caaaatatatt 63416  T

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Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 607 - 546
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| || |||||||||||    
T  607 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagta-caaaatatatt 546  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28855857 - 28855918
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||||| || | || |||||||||||||||||| || |||||||||||    
T  28855857 tctagtacaaaaatatctcaacttgagtatcaaaatatatcatattgagta-caaaatatatt 28855918  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30658898 - 30658960
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||| ||  ||||||||||    
T  30658898 tctagtacaaaaatatctcaaattgagtctcaaaatatatcatattgagtataaaaatatatt 30658960  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22845129 - 22845188
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatata 61  Q
    ||||||||||||||||||||| || | ||||||||||||| ||||||| ||| ||||||||    
T  22845129 tctagtacaaaaatatctcaa-ttgagtaccaaaatatattatattgagtacaaaaatata 22845188  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6297260 - 6297199
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||| ||||||||||| | |  |||||||||||||||||| || |||||||||||    
T  6297260 tctagtacaaaagtatctcaaattgagtctcaaaatatatcatattgagta-caaaatatatt 6297199  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7559717 - 7559656
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||| |||| | |  ||||||||||||||||||||| ||| ||||||||||    
T  7559717 tctagtacaaaaatatttcaattgtg-taccaaaatatatcatattgagtacaaaaatatatt 7559656  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17452953 - 17452892
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| |||| | ||||||||||||| ||||||| ||  ||||||||||    
T  17452953 tctagtacaaaaatatctc-aattgagtaccaaaatatattatattgagtagaaaaatatatt 17452892  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 38426880 - 38426831
Alignment:
Q  9 aaaaatatctcaaatttaata-ccaaaatatatcatattgattaccaaaa 57  Q
    |||||||||||||||||| || ||||||||||||||||||| ||| ||||    
T  38426880 aaaaatatctcaaatttagtatccaaaatatatcatattgagtacaaaaa 38426831  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13290932 - 13290872
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatata 61  Q
    |||| ||||||||||||||||||| | || || ||||||||||||||| | | ||||||||    
T  13290932 tctaatacaaaaatatctcaaattaagtaacataatatatcatattgagtgcaaaaatata 13290872  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 30407 - 30463
Alignment:
Q  6 tacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||| || | ||||||||||||||||||||| ||| ||||||||||    
T  30407 tacaaaaatatctcaa-ttgagtaccaaaatatatcatattgagtacaaaaatatatt 30463  T

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Target: scaffold0327 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 19596 - 19537
Alignment:
Q  3 tagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    ||||||||||||||||||| || | ||| ||||||||||||||||| ||| ||||||||||    
T  19596 tagtacaaaaatatctcaa-ttgagtactaaaatatatcatattgagtacaaaaatatatt 19537  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 84000 - 84114
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgtttaaccttttaattccc 367  Q
    |||||||||| || || |||||||| |||  |||| |||||||||||||| | |||||||||| | || |||| | ||||||||||  ||||| | | ||    
T  84000 aatgtgtgtgttccattcaatgtaggactttcactcttttcaattcacacaacactagttctacccaacatagaaatttgtgtttagtctttttaat-cc 84098  T
Q  368 aatttccacacttgtt 383  Q
    ||||||||||| ||||    
T  84099 aatttccacacatgtt 84114  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 8645 - 8707
Alignment:
Q  269 atgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctat 331  Q
    ||||||||||| ||| ||||||   ||| |||||||||||||||||||| | |||||||||||    
T  8645 atgtgtgtgatttatacaatgtgagacttccacttttttcaattcacacaacactagttctat 8707  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 193643 - 193582
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaatatatt 63  Q
    |||||||||||||||| |||| | |  ||||||||||||||||||||| ||| ||||||||||    
T  193643 tctagtacaaaaatatgtcaattgtc-taccaaaatatatcatattgagtacaaaaatatatt 193582  T

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Target: scaffold0628 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 7528 - 7593
Alignment:
Q  270 tgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaa 335  Q
    |||||||| || |||| |||| | ||| |||||||||| ||||||||| |||||||||||| ||||    
T  7528 tgtgtgtgttccatccgatgtgggacttccacttttttaaattcacacaatactagttctaccaaa 7593  T

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Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 8884 - 8799
Alignment:
Q  268 aatgtgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttctatcaaatataggactttgtgttta 353  Q
    |||||||||| || |||| |||| | | | |||||||||||||||||||| | |||||||||| | || || ||| ||||||||||    
T  8884 aatgtgtgtgttccatccgatgtgggatttccacttttttcaattcacacaacactagttctacccaacatgggaatttgtgttta 8799  T

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Target: scaffold0061 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 48956 - 48899
Alignment:
Q  272 tgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttct 329  Q
    ||||||||| |||| |||| | ||| |||||||||||||||||||| | |||||||||    
T  48956 tgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttct 48899  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 149678 - 149735
Alignment:
Q  272 tgtgtgatctatccaatgtagaactaccacttttttcaattcacaccatactagttct 329  Q
    ||||||||| |||| |||| | ||| |||||||||||||||||||| | |||||||||    
T  149678 tgtgtgatccatccgatgtgggacttccacttttttcaattcacactacactagttct 149735  T

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Target: scaffold0478 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8314 - 8369
Alignment:
Q  1 tctagtacaaaaatatctcaaatttaataccaaaatatatcatattgattaccaaaa 57  Q
    |||||||||||||||||||||||| | |||| ||||| |||||||||| ||| ||||    
T  8314 tctagtacaaaaatatctcaaattcagtacc-aaataaatcatattgagtacaaaaa 8369  T

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