View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2565_low_4 (Length: 405)
Name: NF2565_low_4
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2565_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 32683603 - 32683922
Alignment:
| Q |
20 |
tagggtagccagaagttattatattaaattcgtgaggctgggtttgcgaagtctatgaaaacccccctccgatttttgaaattaaaacgatccctctata |
119 |
Q |
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| T |
32683603 |
tagggtagccagaagttattatattaaattcgtgaggctgggtttgcgaagtctatgaaaacccccctctgatttttgaaattaaaacgatccctctata |
32683702 |
T |
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| Q |
120 |
cgacattttcttaaagcaaatgcctcctatgaaattcttttggtattggagattttgaaatatttcnnnnnnngtgttaaaaataattcatattttagtt |
219 |
Q |
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| T |
32683703 |
cgacattttcttaaagcaaatgcctcctatgaaattcttttggtattggagattttgaaatatttcaaaaaaagtgttaaaaataattcatactttagtt |
32683802 |
T |
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| Q |
220 |
gaggattccaaataggtaatgaaaatcaatttcacactagagaaaatcctcactcatacattactcacagggtctgtagattctcaccatcgaaaagttt |
319 |
Q |
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| T |
32683803 |
gaggattccaaataggtaatgaaaatcaatttcacactagagaaaatcctcactcatacattactcacagggtctgtagattctcaccatcgaaaagttt |
32683902 |
T |
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| Q |
320 |
ttaccaagtgtgtgtacttt |
339 |
Q |
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| T |
32683903 |
ttaccaagtgtgtgtacttt |
32683922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 32684012 - 32684061
Alignment:
| Q |
335 |
actttcttgccgttcctattaagcatcaacatgctctttcatgctattgc |
384 |
Q |
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| T |
32684012 |
actttcttgccattcctattaagcatcaacatgctctttcatgctattgc |
32684061 |
T |
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