View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2565_low_5 (Length: 339)
Name: NF2565_low_5
Description: NF2565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2565_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 30416667 - 30416354
Alignment:
| Q |
18 |
agttgtgatatggtttttgaatgaatttgtcctttttagtgccaatagaatgaggggagaatgcaattttgtgtaaaatgccaacaaccatcagggaaga |
117 |
Q |
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| T |
30416667 |
agttgtgatatggtttttgaatgaatttgtcctttttagtgccaatataatgaggggagaatgcaattttgtgtaaaatgccaacaaccatcagggaaga |
30416568 |
T |
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| Q |
118 |
tgttcttgttataataaatttccnnnnnnnagggagttatctttagacatgcagggagatacatatgttttagattccttggacatgcttgatttcatgc |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30416567 |
tgttcttgttataataaatttcctttttttagggagttatctttagacatgcagggagatacatatgttttagattccttggacatgcttgatttcatgc |
30416468 |
T |
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| Q |
218 |
aatttattacataattattgtttgtcattaattcgtaggtcctgaatgctgataattatcctagctcatccctactgagtccttagtaatgtgtcaaggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30416467 |
aatttattacataattattgtttgtcattaattcgtaggtcctgaatgctgataattatcctagctcagccctactgagtccttagtaatgtgtcaaggg |
30416368 |
T |
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| Q |
318 |
aactatcctatgat |
331 |
Q |
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||||||| |||||| |
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| T |
30416367 |
aactatcttatgat |
30416354 |
T |
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