View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_high_14 (Length: 310)
Name: NF2566_high_14
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 7129152 - 7128859
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7129152 |
gaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcaattatttctataattggaattggaggacttggaa |
7129053 |
T |
|
| Q |
102 |
agactgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagagt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || |
|
|
| T |
7129052 |
agactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgatgtaaaagg |
7128953 |
T |
|
| Q |
202 |
tattgctgcaaagatcacaaaatctaaaactaatggtgagatagaggaaatgcaatccgaactccgcaaaacagttgaaggcaaaagatatttg |
295 |
Q |
| |
|
|||||||||||| |||| | ||||||||| ||||| |||||| || |||||||||| |||||||| ||| |||||| ||| |||||||||| |
|
|
| T |
7128952 |
tattgctgcaaaaatcatagaatctaaaaataatgttgagatggataaaatgcaatcgaaactccgcgaaaaagttgatggccgaagatatttg |
7128859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 7494388 - 7494681
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
7494388 |
gaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcagttatttctataattggaatcggaggactgggga |
7494487 |
T |
|
| Q |
102 |
agactgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagagt |
201 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7494488 |
agactgcgcttgctcaatttgtatacaatgacaagaaagtgaaacaacattttgagtttaaaaaatgggtttgtgtttctgaagattttaatgtaaaagt |
7494587 |
T |
|
| Q |
202 |
tattgctgcaaagatcacaaaatctaaaactaatggtgagatagaggaaatgcaatccgaactccgcaaaacagttgaaggcaaaagatatttg |
295 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| | ||||||||| ||| |||||| ||||||||| | | |||| ||||||||||||||||| |
|
|
| T |
7494588 |
tattgctgcaaagatcataaaatctaacactacagctgagatagaagaagtgcaattggaactccgcgataaagttaaaggcaaaagatatttg |
7494681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 7528105 - 7528398
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
101 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528105 |
gaggaaaagaaagagttgatagagttgttgtttaacactagcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
7528204 |
T |
|
| Q |
102 |
agactgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagagt |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||| || |
|
|
| T |
7528205 |
agactgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaatgggtttgtgtttctgatgattttgatgtaaaagg |
7528304 |
T |
|
| Q |
202 |
tattgctgcaaagatcacaaaatctaaaactaatggtgagatagaggaaatgcaatccgaactccgcaaaacagttgaaggcaaaagatatttg |
295 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| | |||||| || ||| |||||| ||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
7528305 |
tattgctgcaaagatcataaaatctaacactacagctgagatggaagaagtgcaattggaactccgcaataaagttaaaggcaaaagatatttg |
7528398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 7520055 - 7520348
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7520055 |
gaggagaagaaagagttgatagagttgttgtttaacactagcaacaatgtgacagagaatgtttcagttatttctataattggaattggaggacttggaa |
7520154 |
T |
|
| Q |
102 |
agactgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagagt |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||| || |
|
|
| T |
7520155 |
agactgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaatgggtttgtgtttctgatgattttgatgtaaaagg |
7520254 |
T |
|
| Q |
202 |
tattgctgcaaagatcacaaaatctaaaactaatggtgagatagaggaaatgcaatccgaactccgcaaaacagttgaaggcaaaagatatttg |
295 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| |||||| || || | |||| |||||||| ||| ||||||||| | |||||||||| |
|
|
| T |
7520255 |
tattgctgcaaagatcacagaatctcaaactaatgttgagatggataaagttcaattggaactccgtgaaaaagttgaaggaagaagatatttg |
7520348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 7481986 - 7482279
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7481986 |
gaggagaagaaagagttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcaattatttctataattggaattggaggacttggaa |
7482085 |
T |
|
| Q |
102 |
agactgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagagt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||| || |
|
|
| T |
7482086 |
agactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagttgaaaaagtgggtttgtgtttctgatgattttgatgtaaaagg |
7482185 |
T |
|
| Q |
202 |
tattgctgcaaagatcacaaaatctaaaactaatggtgagatagaggaaatgcaatccgaactccgcaaaacagttgaaggcaaaagatatttg |
295 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||| |||||| || || |||||| || ||||| ||| ||||||||| | |||||||||| |
|
|
| T |
7482186 |
tattgcatcaaagatcatagaatctaaaactaatgatgagatggataaagtgcaattggagctccgtgaaaaagttgaaggaagaagatatttg |
7482279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 295
Target Start/End: Complemental strand, 7722425 - 7722133
Alignment:
| Q |
3 |
aggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaaa |
102 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7722425 |
aggagaagaaagagctgatagagttgttgtttaacaccggcaacaatttgaaagagaatgtttcagttatttctataattggaattggaggactcggaaa |
7722326 |
T |
|
| Q |
103 |
gactgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagagtt |
202 |
Q |
| |
|
|||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | |
|
|
| T |
7722325 |
gactgcgcttgctcaacttgtatacggcgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgatgtaaaaggt |
7722226 |
T |
|
| Q |
203 |
attgctgcaaagatcacaaaatctaaaactaatggtgagatagaggaaatgcaatccgaactccgcaaaacagttgaaggcaaaagatatttg |
295 |
Q |
| |
|
|||||| ||||||||| | |||||||||||| || |||||| || || ||||||| |||||| ||| ||||||||| | |||||||||| |
|
|
| T |
7722225 |
attgcttcaaagatcatagaatctaaaactagtgttgagatcgataaagtgcaatctatactccgtgaaaaagttgaagggataagatatttg |
7722133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 7714139 - 7713922
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaa |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7714139 |
gaggagaagaaagagttgatagagttgttgtttaacaccggcaacgatgtgaaggagaatgtttcagttatttctataattggaatcggaggacttggaa |
7714040 |
T |
|
| Q |
102 |
agac-tgcacttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagattttaatgtaagag |
200 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| || |
|
|
| T |
7714039 |
agacgtgcacttgctcaacttttatatggtgacaaagaagtgaaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgatgtaaaag |
7713940 |
T |
|
| Q |
201 |
ttattgctgcaaagatca |
218 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7713939 |
atattgctgcaaagatca |
7713922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 7506652 - 7506699
Alignment:
| Q |
2 |
gaggagaagaaaaagttgatagagttgttgtttaacactggcaacaat |
49 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7506652 |
gaggagaagaaagagttgatagagttgttgtttaacaccggcaacaat |
7506699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 18035241 - 18035190
Alignment:
| Q |
81 |
ttggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
132 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
18035241 |
ttggcattggaggattaggtaagactgcacttgctcaacttgtctacaatga |
18035190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 16750434 - 16750270
Alignment:
| Q |
17 |
ttgatagagttgttgtttaacactggcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaaagactgcacttgctc |
116 |
Q |
| |
|
|||||| |||| ||||| ||||||| || | |||| |||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
16750434 |
ttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgca-ttgctc |
16750336 |
T |
|
| Q |
117 |
aacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctga |
183 |
Q |
| |
|
||||||| ||| |||| | | || |||||||||||||| |||||||| ||||| |||||| |||| |
|
|
| T |
16750335 |
aacttgtgtac-atgataagaccgttcaacaacattttgaattgaaaaagtgggtgtgtgttgctga |
16750270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 10126928 - 10127008
Alignment:
| Q |
110 |
cttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagatttt |
190 |
Q |
| |
|
||||| |||||||| |||||||| | | |||| |||||||||||||| ||||| |||||||||||| ||||| |||||| |
|
|
| T |
10126928 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatttt |
10127008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 10363867 - 10363787
Alignment:
| Q |
110 |
cttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagatttt |
190 |
Q |
| |
|
||||| |||||||| |||||||| | | |||| |||||||||||||| ||||| |||||||||||| ||||| |||||| |
|
|
| T |
10363867 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtctctgaggatttt |
10363787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 10663526 - 10663606
Alignment:
| Q |
110 |
cttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagatttt |
190 |
Q |
| |
|
||||| |||||||| |||||||| | | |||| |||||||||||||| ||||| |||||||||||| ||||| |||||| |
|
|
| T |
10663526 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatttt |
10663606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 4497228 - 4497279
Alignment:
| Q |
81 |
ttggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
132 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4497228 |
ttggcattggaggattaggtaagactgcacttgctcaacttgtctacaatga |
4497279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 4528479 - 4528530
Alignment:
| Q |
81 |
ttggaattggaggacttggaaagactgcacttgctcaacttgtatacaatga |
132 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4528479 |
ttgggattggaggattaggtaagactgcacttgctcaacttgtctacaatga |
4528530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 10088790 - 10088870
Alignment:
| Q |
110 |
cttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagatttt |
190 |
Q |
| |
|
||||| |||||||| |||||||| | | |||| ||||| |||||||| ||||| |||||||||||| ||||| |||||| |
|
|
| T |
10088790 |
cttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggatttt |
10088870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 10195673 - 10195753
Alignment:
| Q |
110 |
cttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagatttt |
190 |
Q |
| |
|
||||| |||||||| |||||||| | | |||| ||||| |||||||| ||||| |||||||||||| ||||| |||||| |
|
|
| T |
10195673 |
cttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggatttt |
10195753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 10375914 - 10375834
Alignment:
| Q |
110 |
cttgctcaacttgtatacaatgacacaaaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgaagatttt |
190 |
Q |
| |
|
||||| |||||||| |||||||| |||||| |||||||||||||| ||||| ||||| |||||| ||||| |||||| |
|
|
| T |
10375914 |
cttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggatttt |
10375834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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