View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_high_24 (Length: 247)
Name: NF2566_high_24
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 43933208 - 43933428
Alignment:
| Q |
21 |
actacagctgcaatttctaattatggttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaa |
120 |
Q |
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| T |
43933208 |
actacagctgcaatttctaattatggttggtatatactatatataaatagaaatgattgaagaaacagaacttactgaaatgatatttggatggcgcaaa |
43933307 |
T |
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| Q |
121 |
cgaaacagcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcca |
220 |
Q |
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| T |
43933308 |
cgaaacagcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcca |
43933407 |
T |
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| Q |
221 |
tgttcttatagatacctctgt |
241 |
Q |
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||||||||||||||||||||| |
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| T |
43933408 |
tgttcttatagatacctctgt |
43933428 |
T |
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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 35132893 - 35132985
Alignment:
| Q |
127 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatcc |
219 |
Q |
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||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| |
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| T |
35132893 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatcc |
35132985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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