View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_high_28 (Length: 242)
Name: NF2566_high_28
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3655042 - 3654818
Alignment:
| Q |
1 |
ttatatcaaacccttgaatcaacctagccaaagtcaaatgcaagacttgcattccaaacgttgcaccagcacatgaccttcttccataactaaatggcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3655042 |
ttatatcaaacccttgaatcaacctagccaaagtcaaatgcaagacttgcattccaaacgttgcaccagcacatgaccttcttccataactaaatggcaa |
3654943 |
T |
|
| Q |
101 |
atatccaaagtcttgattctgaaaattatcaatttgatcatgaatattgaaaaacctctcaggttgaaattcattagggttggaccatactagtgggtcc |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3654942 |
atatccaaattcttgattctgaaaattatcaatttgatcatgaatattgaaaaacctctcaggttgaaatttattagggttggaccatactagtgggtcc |
3654843 |
T |
|
| Q |
201 |
ctttgcaatttccataggttaataa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3654842 |
ctttgcaatttccataggttaataa |
3654818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University