View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_high_34 (Length: 234)
Name: NF2566_high_34
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33437858 - 33438079
Alignment:
| Q |
1 |
attggagaccatgtgtgtgcatccttataaaaaattattcacctacactataattaactcaacttactagtgaattgtgcacttatttattagannnnnn |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33437858 |
attggagaccatgtgtgtacatccttataaaaaattattcacctacactataattaactcaacttactagtgatttgtgcacttatttattagatttttg |
33437957 |
T |
|
| Q |
101 |
nn-aggaagattaattttgatcttgtgtgcaatatatatcttcaaaccgtataaaacaatatcaagtagctatatgcataatgtcttttttctatcaaaa |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33437958 |
tttaggaagattaattttgatcttgtgtgtaatatatatcttcaaaccgtataaaacaatatcaagtagctatatgcataatgtcttttttctatcaaaa |
33438057 |
T |
|
| Q |
200 |
cctatttgctatatgcataatt |
221 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
33438058 |
cctatttgctatatgcataatt |
33438079 |
T |
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