View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_high_37 (Length: 209)
Name: NF2566_high_37
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 23301267 - 23301098
Alignment:
| Q |
18 |
gtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattctaacacatttacattggttatatacacaacttagttcataatccc |
117 |
Q |
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| T |
23301267 |
gtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattctaacacatttacattggttatatacacaacttagttcataatccc |
23301168 |
T |
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| Q |
118 |
tattgcaatacatttgttttggacaatcagaaactctattacatctaatacgcaatgctggaatgaaatg |
187 |
Q |
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| T |
23301167 |
tattgcaatacatttgttttggacaatcagaaactctattacatctaatacgcaatgctggaatgaaatg |
23301098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 16912696 - 16912534
Alignment:
| Q |
18 |
gtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattctaacacatttacattggttatatacacaacttagttcataatccc |
117 |
Q |
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| T |
16912696 |
gtctgaaactaaatacata----tatggggacaaaatctattatttaagtgattctaacacatttacaatatttttgtacacaacctagttcaaaacccc |
16912601 |
T |
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| Q |
118 |
tattgcaatacatttgttttggacaatcagaaactctattacatctaatacgcaatgctggaatgaaatg |
187 |
Q |
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| T |
16912600 |
tattgcaatacattt---ttggacacttagaaacatgaacacatctaagacgcaacgctggaatgaaatg |
16912534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 24198881 - 24198719
Alignment:
| Q |
18 |
gtctgaaactaaatacataatcatatgggcacaaaatctattgcttaagtgattctaacacatttacattggttatatacacaacttagttcataatccc |
117 |
Q |
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| T |
24198881 |
gtctgaaactaaatacata----tatggggacaaaatctattatttaagtgattctaacacatttacaatatttttgtacacaacctagttcaaaacccc |
24198786 |
T |
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| Q |
118 |
tattgcaatacatttgttttggacaatcagaaactctattacatctaatacgcaatgctggaatgaaatg |
187 |
Q |
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||||||||||||||| ||||||| | |||||| | |||||||| |||||| |||||||||||||| |
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| T |
24198785 |
tattgcaatacattt---ttggacacttagaaacatgaacacatctaagacgcaacgctggaatgaaatg |
24198719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 23321266 - 23321131
Alignment:
| Q |
25 |
actaaatacataatcatatgggcacaaaatctattgcttaagtgattctaacacatttacattggttatatacacaacttagttcataatccctattgca |
124 |
Q |
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|||||||||| |||||| || ||||| |||||| | || ||| |||||||||||||||||||||||||||| ||| |||||| || || | ||||||| |
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| T |
23321266 |
actaaatacaaaatcatttgagcacataatctactagttgagtaattctaacacatttacattggttatataaacaccttagtacaaaaccaatattgca |
23321167 |
T |
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| Q |
125 |
atacatttgttttggacaatcagaaactctattacatct |
163 |
Q |
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| T |
23321166 |
acgtat---ctttggacaatcagaaactctgttacatct |
23321131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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