View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_high_6 (Length: 540)
Name: NF2566_high_6
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 39846025 - 39846225
Alignment:
| Q |
48 |
ccacttgtaactcattcatggcctctgacttttgcatcaataacaaagctaattctaattggatataagattccattcttttgacatcttgaatcgacaa |
147 |
Q |
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| T |
39846025 |
ccacttgtaactcattcatggcctctgacttttgcatcaataacaaagctaattctaattggatataagattccattcttttgacatcttgaatcgacaa |
39846124 |
T |
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| Q |
148 |
cgcaaccatgttttgtgccatctgccttggagaagaagtttgcataaatcaacattagccagaactagaataataataatttgattgatgctgcgaacca |
247 |
Q |
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| T |
39846125 |
cgcaaccatgttttgtgccatctgccttggagaagaagtttgcataaatcaacattagctag---------aataataatttgattgatgctgagaacca |
39846215 |
T |
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| Q |
248 |
aggccgaaag |
257 |
Q |
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| T |
39846216 |
aggccgaaag |
39846225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 284 - 493
Target Start/End: Complemental strand, 39846225 - 39846025
Alignment:
| Q |
284 |
ctttcggccttggttcgcagcatcaatcaaattattattattctagttctggctaatgttgatttatgcaaacttcttctccaaggcagatggcacaaaa |
383 |
Q |
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|||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846225 |
ctttcggccttggttctcagcatcaatcaaattattatt---------ctagctaatgttgatttatgcaaacttcttctccaaggcagatggcacaaaa |
39846135 |
T |
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| Q |
384 |
catggttgcgttgtcgattcaagatgtcaaaagaatggaatcttatatccaattagaattagctttgttattgatgcaaaagtcagaggccatgaatgag |
483 |
Q |
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| T |
39846134 |
catggttgcgttgtcgattcaagatgtcaaaagaatggaatcttatatccaattagaattagctttgttattgatgcaaaagtcagaggccatgaatgag |
39846035 |
T |
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| Q |
484 |
ttacaagtgg |
493 |
Q |
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| T |
39846034 |
ttacaagtgg |
39846025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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