View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_high_9 (Length: 449)
Name: NF2566_high_9
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 669014 - 669087
Alignment:
| Q |
7 |
tccaagaatatcgagacaatatatccctgatatacaatatgtggtaaacaataataaacttcctttcttctttc |
80 |
Q |
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| T |
669014 |
tccaaaaatatcgagacaatatatccctgatatacaatatgtagtaaacaataataaacttcctttcttctttc |
669087 |
T |
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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 375
Target Start/End: Complemental strand, 668856 - 668669
Alignment:
| Q |
193 |
ctggattgtttgatcaacttaaaaggcagttcagtttattgtgaacttttaatttactcaactatcatnnnnnnntatttaatgctttcatgtgttttct |
292 |
Q |
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| T |
668856 |
ctggattgtttgatcaacttaaaaggcagtt-----tattgtgaacttttaatttactcaactatcataaaaaaatatttaatgctttcatgtgttttct |
668762 |
T |
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| Q |
293 |
tnnnnnnnnctacaattg-gt-----------ccaattttctggcacctcaatattgtgtaccctttgaaaatgggcatcaatcacaaggagagt |
375 |
Q |
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| T |
668761 |
taaaaaaaactacaattgtgttatttggacaaacaattttctggcacctcaatat--tgtaccctttgaaaatggacatcaatcacaaggagagt |
668669 |
T |
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