View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_1 (Length: 717)
Name: NF2566_low_1
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 249 - 646
Target Start/End: Original strand, 38796272 - 38796669
Alignment:
| Q |
249 |
aaagagagattctgattttgccttcatattgtcctatacagtaatccaatgataatgttaaagataagagttactaaaaattggatgtggaaacaaacaa |
348 |
Q |
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| T |
38796272 |
aaagagagattctgattttgccttcatattgtcctatacagtaatccaatgataatgttaaagataagagttactaaaaattggatgtggaaacaaacaa |
38796371 |
T |
|
| Q |
349 |
ggatggggtttatcttaggatcatataaaaaactaaagcaaaagatggaagtacataccacaacttgttttagccccatcgctgtggtcttcatccacat |
448 |
Q |
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| T |
38796372 |
ggatggggattatcttaggatcatataaaaaacaaaagcaaaagatggaagtacataccacaacttg-tttagccccatcgttgtggtcttcatccacat |
38796470 |
T |
|
| Q |
449 |
aaacactatgaatcagtagtggcgtggttgattcaatatccttggatgcaaggccatatcgatactagttagaatttttccataagctctataaat-aga |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
38796471 |
aaacactatgaatcagtagtggcgtggttgattcaatatccttggatgcaaggccatatcgatactagttagaatttttccataagatctataaataaga |
38796570 |
T |
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| Q |
548 |
gacaatatttgttgcctttccaacttcatctgtccctattaaacgaaagtgcacaaatgagaatgtgattccatctttttgaaaggccaccaacaggga |
646 |
Q |
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| T |
38796571 |
gacaatatttgttgcctttccaacttcatctgtccctattaaacgaaagtgcacaaatgagaatgtgattccatctttttgaaaggccaccaacaggga |
38796669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38796054 - 38796275
Alignment:
| Q |
1 |
actaaaaacaaaagtattaccaaactgttatttccaaatgaaagagaaaggacgaaaattgttgctgcactagagaaatgtgaaatcaaagagtgggagc |
100 |
Q |
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| T |
38796054 |
actaaaaacaaaagtattaccaaactgttatttccaaatgaaagagaaaggacgaaaattgttgctgcactagagaaatgtgaaatcaaagagtgggagc |
38796153 |
T |
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| Q |
101 |
annnnnnngttcatgcatcgatgccagttaatttcagttctgtgattaatcaaagagtggatgaatgcgtgaaactctcattttgctaaacattgtcaaa |
200 |
Q |
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| T |
38796154 |
atttttttgttcatgcatcgatgccagttaatttcagttctgtgattaatcaaagagtggatgaatgtgtgaaactctcattttgctaaacattgtcaaa |
38796253 |
T |
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| Q |
201 |
gctagattctccgtcttcaaag |
222 |
Q |
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| T |
38796254 |
gctagattctccgtcttcaaag |
38796275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 180 - 456
Target Start/End: Original strand, 38425048 - 38425319
Alignment:
| Q |
180 |
attttgctaaacattgtcaaagctagattctccgtcttcaaaggcataccgctggaacaatttaagagtaaagagagattctgattttgccttcatattg |
279 |
Q |
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| T |
38425048 |
attttgcaaagcattgtcaaagctagattctccgtcttcaaaggcataccgctggagcaattcgggagtgaagagagaatctgattttgccttcatatca |
38425147 |
T |
|
| Q |
280 |
tcctatacagtaatccaatgataatgttaaagataagagttactaaaaattggatgtggaaacaaacaaggatggggtttatcttaggatcatataaaaa |
379 |
Q |
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| T |
38425148 |
tcctatacagtaatccagtg---atgttaaagataagagcttctaaaaattagatgtggaaagaaacaaggatgggtattatcttaggatcttataaaaa |
38425244 |
T |
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| Q |
380 |
actaaagcaaaagatggaagtacataccacaacttgttttagccccatcgctgtggtcttcatccacataaacacta |
456 |
Q |
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| T |
38425245 |
a-taaagcaaatgatggaagtacatacctcaaattg-tttagccccatcgttgaggtcttcatccacagaaacacta |
38425319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 38423649 - 38423719
Alignment:
| Q |
30 |
atttccaaatgaaagagaaaggacgaaaattgttgctgcactagagaaatgtgaaatcaaagagtgggagc |
100 |
Q |
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| T |
38423649 |
atttccaaatgaaagagagaggacgaaaattgttactgcactagagaaatgtgaaatcaaagagtgggagc |
38423719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 591
Target Start/End: Original strand, 38425563 - 38425686
Alignment:
| Q |
467 |
gtggcgtggttgattcaatatccttggatgcaaggccatatcgatactagttagaatttttccataagctctataaatagagacaatatttgttgccttt |
566 |
Q |
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| T |
38425563 |
gtggcatggttgattcgatctccttgaatgcaagaccatgtagatatttgt-agaatttcttcataacctttataaatagagacaatatttgttgccttt |
38425661 |
T |
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| Q |
567 |
ccaacttcatctgtccctattaaac |
591 |
Q |
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| T |
38425662 |
ccaaccccatttgtccctgttaaac |
38425686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 639 - 678
Target Start/End: Original strand, 38796678 - 38796717
Alignment:
| Q |
639 |
aacagggataaataattcttcttaatggcaaaaacagatg |
678 |
Q |
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| T |
38796678 |
aacagggataaataattctacttaatggcaaaaacagatg |
38796717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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