View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_10 (Length: 473)
Name: NF2566_low_10
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 50774886 - 50774648
Alignment:
| Q |
4 |
ggatgtcgaagaatatacttctcacgcttgttggatttcgtacggccaacatacttttagctgagatatataaacttgtttaaccactttcagtccaatc |
103 |
Q |
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| T |
50774886 |
ggatgtcgacggaaatacttctcacgcttgttggatttcgtacggccaacatatttttagctg-gatatataaacttgtttaaccactttcagtccaatc |
50774788 |
T |
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| Q |
104 |
aatatgcttttatgggcgcaaatgatagtttcagcactcaaatggagaatatgatcaaaattgattaaaaaatgattttagttttgtacaataattgagt |
203 |
Q |
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| T |
50774787 |
aatatgcttttatgggcgcaaatgatggtttcagcactcaaatggagaatatgatcaaaattgattaaaaagtgattttagttttgtacaataattgagt |
50774688 |
T |
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| Q |
204 |
tggttttcaaaattatttaattttatactatgatgatgag |
243 |
Q |
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| T |
50774687 |
tggttttcaaaattatttagttttatactatgatgatgag |
50774648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 240 - 455
Target Start/End: Complemental strand, 50774586 - 50774373
Alignment:
| Q |
240 |
tgagctaagctcacgaggacgttgatgatgagtctgattgacatgtaacatagtttaacgtagaataatttatatattaactatgtttgttttgataaac |
339 |
Q |
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| T |
50774586 |
tgagctaagctcacgaggacgatgatgatgagtctgattgacatgtaacatagtttaacgtagaataatttatacattaactatgtttgttttgataaac |
50774487 |
T |
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| Q |
340 |
aaatattagtaggttacgttattttatttggcttttgtgtaggatttttcgctcttggcctcttaagtaaaagccataaattatcaagtgtttttagacg |
439 |
Q |
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| T |
50774486 |
aaatattagtaggttacgttattttatttggcttttgtgtaggatttttcgctcttggcctcttaagtaaaagccataaattatcaagtgtttttagac- |
50774388 |
T |
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| Q |
440 |
tgtggtcttgttttgt |
455 |
Q |
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| T |
50774387 |
-gtggtcttgttttgt |
50774373 |
T |
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