View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2566_low_11 (Length: 465)

Name: NF2566_low_11
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2566_low_11
NF2566_low_11
[»] chr8 (14 HSPs)
chr8 (36-455)||(7956226-7956645)
chr8 (165-452)||(44223215-44223503)
chr8 (165-423)||(17722330-17722596)
chr8 (164-427)||(35948826-35949097)
chr8 (165-372)||(3767625-3767832)
chr8 (164-455)||(9040426-9040718)
chr8 (165-409)||(25456064-25456308)
chr8 (169-315)||(34760832-34760979)
chr8 (258-409)||(25808217-25808368)
chr8 (216-383)||(9505077-9505244)
chr8 (216-409)||(16570794-16570987)
chr8 (169-242)||(20860427-20860500)
chr8 (209-391)||(32321853-32322035)
chr8 (296-372)||(25344101-25344177)
[»] chr1 (13 HSPs)
chr1 (164-455)||(16584750-16585051)
chr1 (208-447)||(1161327-1161565)
chr1 (169-455)||(8083990-8084290)
chr1 (164-455)||(11619933-11620216)
chr1 (167-366)||(25785763-25785962)
chr1 (167-408)||(18461120-18461362)
chr1 (208-445)||(42009880-42010102)
chr1 (216-409)||(11911646-11911839)
chr1 (358-437)||(25787286-25787365)
chr1 (169-217)||(32678554-32678602)
chr1 (165-240)||(4919491-4919566)
chr1 (165-198)||(33857601-33857634)
chr1 (165-198)||(33923289-33923322)
[»] chr2 (12 HSPs)
chr2 (208-455)||(31111466-31111713)
chr2 (167-447)||(13852163-13852453)
chr2 (169-409)||(4638168-4638417)
chr2 (165-450)||(36009179-36009462)
chr2 (168-455)||(38606980-38607275)
chr2 (165-455)||(37630343-37630634)
chr2 (208-455)||(29109042-29109295)
chr2 (165-254)||(27866622-27866710)
chr2 (208-452)||(5526270-5526519)
chr2 (209-313)||(3919883-3919987)
chr2 (194-245)||(10721926-10721977)
chr2 (164-213)||(12894051-12894100)
[»] chr7 (13 HSPs)
chr7 (165-453)||(7352258-7352555)
chr7 (165-453)||(46993258-46993552)
chr7 (165-447)||(39695087-39695370)
chr7 (165-442)||(7994955-7995234)
chr7 (210-343)||(11727326-11727449)
chr7 (208-408)||(46265238-46265436)
chr7 (165-455)||(3996825-3997128)
chr7 (236-388)||(2197623-2197775)
chr7 (210-453)||(48070669-48070918)
chr7 (165-218)||(27227036-27227089)
chr7 (165-372)||(31136158-31136357)
chr7 (296-409)||(35738067-35738178)
chr7 (216-409)||(25545139-25545332)
[»] chr4 (11 HSPs)
chr4 (208-455)||(28319176-28319423)
chr4 (164-453)||(23107789-23108098)
chr4 (208-448)||(24466202-24466448)
chr4 (216-382)||(4413515-4413681)
chr4 (165-455)||(42141257-42141545)
chr4 (208-367)||(8606106-8606265)
chr4 (169-409)||(53393087-53393337)
chr4 (170-245)||(13207472-13207547)
chr4 (259-383)||(8056816-8056939)
chr4 (319-409)||(19682001-19682091)
chr4 (165-214)||(39839104-39839153)
[»] scaffold0879 (1 HSPs)
scaffold0879 (208-448)||(467-713)
[»] chr5 (6 HSPs)
chr5 (208-427)||(19947761-19947980)
chr5 (214-405)||(16746357-16746548)
chr5 (165-447)||(31895896-31896181)
chr5 (165-331)||(16746550-16746726)
chr5 (209-406)||(1498129-1498326)
chr5 (175-233)||(41092105-41092163)
[»] chr3 (13 HSPs)
chr3 (216-408)||(46655576-46655768)
chr3 (168-455)||(44471020-44471323)
chr3 (208-383)||(11503284-11503459)
chr3 (210-292)||(30554588-30554670)
chr3 (210-452)||(44681881-44682129)
chr3 (208-254)||(46892657-46892703)
chr3 (210-306)||(779533-779629)
chr3 (165-455)||(26757593-26757901)
chr3 (324-447)||(46892755-46892884)
chr3 (209-455)||(28550497-28550749)
chr3 (164-372)||(22240516-22240724)
chr3 (210-286)||(44285615-44285691)
chr3 (297-373)||(47831242-47831317)
[»] scaffold0565 (1 HSPs)
scaffold0565 (172-453)||(1729-2013)
[»] scaffold0070 (2 HSPs)
scaffold0070 (165-409)||(13756-14000)
scaffold0070 (165-212)||(33729-33776)
[»] chr6 (8 HSPs)
chr6 (222-409)||(11846307-11846494)
chr6 (235-455)||(9826817-9827043)
chr6 (336-455)||(1208739-1208864)
chr6 (408-455)||(5416284-5416331)
chr6 (208-314)||(23301464-23301570)
chr6 (164-292)||(23585862-23585990)
chr6 (408-451)||(2453993-2454036)
chr6 (407-453)||(26186588-26186634)
[»] scaffold0002 (1 HSPs)
scaffold0002 (164-230)||(344452-344518)
[»] scaffold0564 (1 HSPs)
scaffold0564 (210-312)||(6366-6472)


Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 36 - 455
Target Start/End: Complemental strand, 7956645 - 7956226
Alignment:
Q  36 atatttaactacgtactccaaattgaaagttagtacgtacttagtaaaaacatgaaagaaagttttataacttgaatgattaattttattcgtattattt 135  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  || ||||||    
T  7956645 atatttaactacatactccaaattgaaagttagtacgtacttagtacaaacatgaaagaaagttttatcacttgaatgattaattttatgtgtcttattt 7956546  T
Q  136 tgacacttttgatctacaacaagtacacgtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgct 235  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  7956545 tgacacttttgatctacgacaagtacacgtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgaccttgct 7956446  T
Q  236 tggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcc 335  Q
    | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  7956445 ttgtttggtttgaaaccgattcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatcc 7956346  T
Q  336 gatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcac 435  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  7956345 gatgataaccatactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaatacattctc 7956246  T
Q  436 tttctctcatcttcatctca 455  Q
    |||||||||| |||||||||    
T  7956245 tttctctcatattcatctca 7956226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 165 - 452
Target Start/End: Complemental strand, 44223503 - 44223215
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||  || |||| ||||||| |||| ||||||||  |||||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaa 44223404  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44223403 tcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacaaa 44223304  T
Q  365 tattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaata-ttttttaattcattcactttctctcatcttcatc 452  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  44223303 tattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaatccattcactttctctcatcttcatc 44223215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 165 - 423
Target Start/End: Complemental strand, 17722596 - 17722330
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| || ||||| ||    
T  17722596 taggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccggaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaa 17722497  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17722496 tcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgataaccacactcattactttactaa 17722397  T
Q  365 tatta--------tcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttt 423  Q
    |||||        |||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||    
T  17722396 tattatcataaattcctacctcacacatactcatggttaggcccaaaattaaacataaaataatttt 17722330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 164 - 427
Target Start/End: Original strand, 35948826 - 35949097
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 253  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||||||  |||          |||||||||||| ||| |||||||||||||||||||    
T  35948826 gtaggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccg 35948925  T
Q  254 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcct 353  Q
    || |||| || || ||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  35948926 atccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgataacaacattcct 35949025  T
Q  354 tattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaat 427  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  35949026 tattttactaatattatcctacct--cacaaacttatggttaggcccaaaattaaacataaaatactttttaat 35949097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 165 - 372
Target Start/End: Complemental strand, 3767832 - 3767625
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    |||| |||||||||||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||| || ||||||||  |||||||  ||||||||    
T  3767832 taggagtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaa 3767733  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    || ||||||||||| |||||||||||||  ||||||| |||| |||||||    |||||||||||| | |||||| ||||| ||||||  |||||| |||    
T  3767732 tctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaa 3767633  T
Q  365 tattatcc 372  Q
    ||||||||    
T  3767632 tattatcc 3767625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 455
Target Start/End: Original strand, 9040426 - 9040718
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 263  Q
    |||||||| |||| |||||| | |||||| ||||||||||||||||||||||||||  ||||||||||||| | | | ||||  |||||||     ||||    
T  9040426 gtaggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaaaatgtatccgaccttgccttgataggttcaaaaccga-----acca 9040520  T
Q  264 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 363  Q
    ||| ||||||||||  |||||||||||||  |||||||||||| ||||||   |||||||||||||| |   |||| ||||| |||| |  |||||||||    
T  9040521 atctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaaccgagttgatgctaaccccacttcccattttacta 9040620  T
Q  364 atattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
     ||||||||  ||||||||| ||||||| ||| || ||||||||      || |||||||| |  ||||||||||||||||||| |||  ||||||||    
T  9040621 ttattatccctcctcacacacacttatgattaggctcaaaattaaagctcaagataaaatactacttaattcattcactttctcccattatcatctca 9040718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 409
Target Start/End: Complemental strand, 25456308 - 25456064
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    ||||||||||||  ||||| |||||| ||||||||   ||| ||||||||| |||  ||||||||||||  |||||| |||  |||||||  |||| |||    
T  25456308 taggggtgtaagaagttcggacaaaatcaatgaaactaaaattccaaaccggaaatgtatccgaccttgtctggttcagttcaaaaccgaaccgaatcaa 25456209  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    || ||||| ||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | | |||| ||||| ||||||  |||||||||     
T  25456208 tctaaaccaatcttgtttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaactgatgctaacctcactccccattttactat 25456109  T
Q  365 tattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
    ||||||||  | ||||||| |||||||  ||||||||||||||||    
T  25456108 tattatccctcttcacacacacttatgagtatgcccaaaattaaa 25456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 169 - 315
Target Start/End: Complemental strand, 34760979 - 34760832
Alignment:
Q  169 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaa-tatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg 267  Q
    |||||||| |||||| |||||||| |||||| ||||| ||||||||||||||| |||| || |||| |||||||||||  ||| |||  |||||||| |     
T  34760979 ggtgtaagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccgaaaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaaccaacct 34760880  T
Q  268 aaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||||||||| ||||||||||||| |||||||| |||| ||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 258 - 409
Target Start/End: Complemental strand, 25808368 - 25808217
Alignment:
Q  258 gaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 357  Q
    ||||||||| |||||||||| |||||||||| |||  |||||||||||| |||||||  |||| ||||||| | | |||||| ||||| ||||||| |||    
T  25808368 gaaccaatctaaaccgatcttttttggtttgattctcggtttttcattttgagatccaagaaatcgatgaatcgaaccgatgctaacctcactcctcatt 25808269  T
Q  358 ttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
    ||| || ||||||||  | ||||||| |||||||  |||||| |||||||||    
T  25808268 ttaatattattatccctcttcacacacacttatgagtatgcctaaaattaaa 25808217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 383
Target Start/End: Original strand, 9505077 - 9505244
Alignment:
Q  216 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||||||||| |||||| |||||||| ||  ||| |||  |||||||| | |||||||| || ||||||| |||||  || |||| |||| || ||||     
T  9505077 aaaaaatatccaaccttgtttggttcgattcaaaatcgaaccgaaccaaccaaaaccgatatagtttggttcggttctaggattttaattttgaaatcca 9505176  T
Q  316 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacaca 383  Q
      |||||||| |||| | ||||||  |||| ||||||  |||||| |||||||||||| |||||||||    
T  9505177 acaaaccgataaaccgaaccgatgccaacctcactccccattttagtaatattatccttcctcacaca 9505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 409
Target Start/End: Complemental strand, 16570987 - 16570794
Alignment:
Q  216 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||||||||| |||||| |||||| ||||  |||||||  | |||||| | ||||||||||| ||||||| |||||  | ||||| |||| |||||||     
T  16570987 aaaaaatatccaaccttgtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatcca 16570888  T
Q  316 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
       |||||||||||  | |||||| ||||  ||||||  |||||| || ||||||||  ||||||||| | ||||| |||  | ||||||||||    
T  16570887 aagaaccgatgaactgaaccgatgctaacttcactccccattttagtattattatccctcctcacacacatttatgattaaactcaaaattaaa 16570794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 20860500 - 20860427
Alignment:
Q  169 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcg 242  Q
    ||||||||||||||| |||||||| |||||| ||||| | ||||| |||||| |||| ||||||| ||||||||    
T  20860500 ggtgtaagtggttcgaacaaaaccgatgaaaccgaaaattcaaactgaaaaattatctgaccttgtttggttcg 20860427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 391
Target Start/End: Original strand, 32321853 - 32322035
Alignment:
Q  209 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 308  Q
    |||||||||||| ||| |||||||| |||||||||||| ||| | |  |||| |||   ||||||||||| ||||||| |||||  ||||||| ||||      
T  32321853 caaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaaaccgaatcaacataaaccgatctaatttggttcggttctcggtttttaatttta 32321952  T
Q  309 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatg 391  Q
    |||| |    ||||||| |||||| || ||| ||||| |||||   |||||| ||||||||||   ||||||||| |||||||    
T  32321953 agattcaatgaaccgataaaccaaaccaatgctaacctcactctccattttagtaatattatctctcctcacacacacttatg 32322035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 25344177 - 25344101
Alignment:
Q  296 gtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcc 372  Q
    ||||||||||| ||||| |  ||||| |||||| | | |||||| ||||| ||||||| ||||||||| ||||||||    
T  25344177 gtttttcattttgagattcaagaaacagatgaatctaaccgatgctaacctcactcctcattttactactattatcc 25344101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 164 - 455
Target Start/End: Complemental strand, 16585051 - 16584750
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 253  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||          ||||||||| |||||| |||||||||||||||||||    
T  16585051 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16584952  T
Q  254 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcct 353  Q
    || |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  16584951 atccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgataaccaaactcct 16584852  T
Q  354 tattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatct 453  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  16584851 tattttactaatattatcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatccattcactttctctaatcttcatct 16584752  T
Q  454 ca 455  Q
    ||    
T  16584751 ca 16584750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 208 - 447
Target Start/End: Complemental strand, 1161565 - 1161327
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    ||||||||||||| |||||||||||  |||||||||||||||||| || | | |||||||||||||||||| ||||||||||||||||||||||||||||    
T  1161565 ccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatctagtttggtttggttcatggtttttcatttc 1161467  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1161466 gatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttcagcccaaaatta 1161367  T
Q  408 aacataaaatattttttaattcattcactttctctcatct 447  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  1161366 aacataaaatattttttaatccattcactttctcttatct 1161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 169 - 455
Target Start/End: Original strand, 8083990 - 8084290
Alignment:
Q  169 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac----------cgaaaa-aatatccgaccttgcttggttcggtttgaaaccgattc 257  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||          |||||| |||||||||||||| |||||| ||||||||||| || |    
T  8083990 ggtgtaagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatcc 8084089  T
Q  258 gaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 357  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  8084090 gaaccaatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgataaccacactccttatt 8084189  T
Q  358 ttactaat---attatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatctc 454  Q
    ||||||||    ||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  8084190 ttactaatccatttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatctattcactttctctcatcttcatctc 8084289  T
Q  455 a 455  Q
    |    
T  8084290 a 8084290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 164 - 455
Target Start/End: Original strand, 11619933 - 11620216
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 263  Q
    |||||||||||||||||||| |||||||||| |||| |||||      ||| ||||||||||||| |||| ||||||| ||||||||||||| | ||| |    
T  11619933 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaa------accaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaacta 11620026  T
Q  264 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 363  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  11620027 atcgaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttacta 11620126  T
Q  364 atattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||||||| ||||| ||||||||  |||||||||||| |||||||||||||    
T  11620127 atattatcctacct--cacaaacttatggttaaacccaaaattaaacatgaaatactttttaatcaattcactttctcccatcttcatctca 11620216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 167 - 366
Target Start/End: Original strand, 25785763 - 25785962
Alignment:
Q  167 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatc 266  Q
    ||||||||||||||||| |||||||||| ||||  |||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  25785763 ggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatc 25785862  T
Q  267 gaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaata 366  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  25785863 gaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttactaata 25785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 167 - 408
Target Start/End: Original strand, 18461120 - 18461362
Alignment:
Q  167 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa-aaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaat 265  Q
    ||||||||||||||||  |||||||||| |||| | |||||||||||| ||  ||||||||||||||| || ||||||||| ||| ||||  | ||||||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaatatccgaccttgtttagttcggtttcaaatcgatctggaccaat 18461219  T
Q  266 cgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaat 365  Q
    | |||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  18461220 caaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcattaatttattaat 18461319  T
Q  366 attatcctacctcacacaaacttatggttatgcccaaaattaa 408  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||    
T  18461320 attatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 208 - 445
Target Start/End: Complemental strand, 42010102 - 42009880
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||| |||||||||||| ||| |||||  ||||||||||||||||     
T  42010102 ccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcatttt 42010003  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    |||||                     ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  42010002 gagat---------------------ccgatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaatta 42009924  T
Q  408 -----aacataaaata-ttttttaattcattcactttctctcat 445  Q
         ||||||||||| |||||| || |||||| ||||||||||    
T  42009923 aagtcaacataaaatactttttttatccattcattttctctcat 42009880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 216 - 409
Target Start/End: Original strand, 11911646 - 11911839
Alignment:
Q  216 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||| |||||||||||| |||||||||||  |||||||  |||||||| | ||||||||||| |||| ||| |||| |||||||| |||| || |||||    
T  11911646 aaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtttttaattttgaaatccg 11911745  T
Q  316 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
       |||||||||||||| |||||  ||| | ||||||  |||| | |||||||||||  | |||| || ||||||| ||| || ||||||||||    
T  11911746 atgaaccgatgaaccaaaccgatactaaactcactccccatttgagtaatattatccctcatcacgcacacttatgattaagctcaaaattaaa 11911839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 25787286 - 25787365
Alignment:
Q  358 ttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactt 437  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||| |||||||| ||| |||||    
T  25787286 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcactt 25787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 32678602 - 32678554
Alignment:
Q  169 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 217  Q
    ||||||||||||||| |||||||| |||||||||||| | |||||||||    
T  32678602 ggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaa 32678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 4919491 - 4919566
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggtt 240  Q
    ||||||||||||||||  | |||||||| | |||| ||||||| |||||||||||  |||| |||||||| |||||    
T  4919491 taggggtgtaagtggtagggacaaaaccgacgaaaccgaaagttcaaaccgaaaaggtatctgaccttgcctggtt 4919566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 33857601 - 33857634
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaa 198  Q
    ||||||||||||||||||| ||||||||||||||    
T  33857601 taggggtgtaagtggttcggacaaaaccaatgaa 33857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 33923322 - 33923289
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaa 198  Q
    ||||||||||||||||||| ||||||||||||||    
T  33923322 taggggtgtaagtggttcggacaaaaccaatgaa 33923289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 208 - 455
Target Start/End: Original strand, 31111466 - 31111713
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| |||||||||||| |||||||||||||||||||||||||||     
T  31111466 ccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 31111565  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    ||||||| |||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  31111566 gagatccttgaaaccgataaaccaatctggtgataaccacacttcttattttactaatattatcctacctcacacaaaattatggttaggcgcaaaatta 31111665  T
Q  408 aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||    
T  31111666 aatataaaatactttttaattcattcactttctctcatcttcatctca 31111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 167 - 447
Target Start/End: Complemental strand, 13852453 - 13852163
Alignment:
Q  167 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccgatt 256  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||  |||          |||||||| ||| ||| ||| |||||||||||||||||     
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  257 cgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttat 356  Q
    | |||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttgataaccacactccttat 13852254  T
Q  357 tttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatct 447  Q
    |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13852253 tttattaatattatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactttctctcatct 13852163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 169 - 409
Target Start/End: Original strand, 4638168 - 4638417
Alignment:
Q  169 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcga 268  Q
    |||||||| |||||  || ||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||| |    
T  4638168 ggtgtaagcggttcagactaaaccaacgaaaccgaaagtccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaa 4638267  T
Q  269 aaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctta----ttttactaa 364  Q
     || ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  4638268 tactgatttagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttaattcttttactaa 4638367  T
Q  365 tattatcctac-----ctcacacaaacttatggttatgcccaaaattaaa 409  Q
    ||||||||| |     |||||||||| |||||||||  ||||||||||||    
T  4638368 tattatcctcctcacactcacacaaaattatggttagacccaaaattaaa 4638417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 165 - 450
Target Start/End: Original strand, 36009179 - 36009462
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    |||||||  |||| ||||| ||||||| || |||||| ||||||||||  |||||||||||||| |||| || ||||||||||||||||||  ||| |||    
T  36009179 taggggttcaagtagttcggacaaaactaacgaaatcaaaagtccaaattgaaaaaatatccgatcttgtttagttcggtttgaaaccgatctgaatcaa 36009278  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    ||          || ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36009279 tc----------tagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaa 36009368  T
Q  365 tattatc--------ctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttca 450  Q
    |||||||        |||||| ||||||| | ||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36009369 tattatcctacatttctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatccattcactttctctcatcttca 36009462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 168 - 455
Target Start/End: Original strand, 38606980 - 38607275
Alignment:
Q  168 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg 267  Q
    ||||||||| |||||  |||||| ||| ||||  | |||||||||||||||| ||||||||||||| ||| |||| ||  |||||||  ||||||||||     
T  38606980 gggtgtaagcggttcagacaaaatcaacgaaactgtaagtccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatct 38607078  T
Q  268 aaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatat 367  Q
    |||| || ||  ||||||| ||||| ||||||||||||| ||||||| | ||||||||||||| ||  |||| |||||||||||   ||||||||||| |    
T  38607079 aaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactcgccattttactaatgt 38607178  T
Q  368 tatcctacctcacac----aaacttatggttatgcccaaaatta-----aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    |||||  ||||||||    | ||||||| ||| |||||||||||     ||||||||||| | |||||| |||||| ||| ||||||| ||||||||    
T  38607179 tatccctcctcacacgcaaacacttatgattaggcccaaaattaagtccaacataaaatactatttaatccattcattttatctcatcatcatctca 38607275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 455
Target Start/End: Original strand, 37630343 - 37630634
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    |||||||||||||| |||| |||||||| |||||| ||||   ||||||||||||| ||||  ||||||||||||| ||||  ||| |||| | ||||||    
T  37630343 taggggtgtaagtgattcggacaaaaccgatgaaaccgaa---ccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaa 37630439  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
     | |||| |||||| |||||||  ||||  ||||||| |||| |||||||    ||||| |||||| |   |||| ||||  ||||||  | |||| |||    
T  37630440 cctaaactgatctagtttggttcagttctcggtttttaattttgagatccaatgaaccggtgaaccgaatggatgctaacatcactccccactttagtaa 37630539  T
Q  365 tattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    ||||||||  ||||||||  ||||||| ||| || ||||||||      ||||| ||||| || |||||||||||||||||||||||| || |||||    
T  37630540 tattatccctcctcacac--acttatgattaagctcaaaattaaagtccaacatcaaatacttcttaattcattcactttctctcatcatcgtctca 37630634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 208 - 455
Target Start/End: Complemental strand, 29109295 - 29109042
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||| |||||| |||||||||||| ||||||| |||  |||||||  |||| ||| | ||||| ||||| |||||||||||||  ||||||| ||||     
T  29109295 ccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccgaaccgaagcaacctaaaccaatctagtttggtttggttctcggtttttaatttt 29109196  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    |||||||    ||||||||||||||  ||||| |||||   || |  |||||| |||||||||||  ||||||||| | ||||  ||| || ||||||||    
T  29109195 gagatccaaagaaccgatgaaccaaatcgatgctaaccttccttcccattttagtaatattatcccccctcacacacaattataattaagctcaaaatta 29109096  T
Q  408 ------aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
          ||||||||||| |  |||||||||||||||||||  ||| ||||||||    
T  29109095 aagtccaacataaaatactccttaattcattcactttctcctatcatcatctca 29109042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 27866622 - 27866710
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    ||||||||||||||||||| |||||| | || ||| ||||| ||||||||| |||| ||||||||||||||||||||||||  |||||||    
T  27866622 taggggtgtaagtggttcggacaaaatcgataaaaccgaaaatccaaaccg-aaaagtatccgaccttgcttggttcggttcaaaaccga 27866710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 452
Target Start/End: Original strand, 5526270 - 5526519
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    ||||||||||||  |||||||||||| || ||||||||  |||| ||  |||||||| | ||||||||||| ||||||| |||||   |||||| ||||     
T  5526270 ccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaaccaacctaaaccgatctagtttggttcggttctcagtttttaatttt 5526368  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    |||||||    ||| |||||||| | |||||| ||| | ||||||  |||||| || ||||||||  ||| ||||| ||||||| |||  | ||||||||    
T  5526369 gagatccaaagaacagatgaaccgaaccgatgctaatctcactccccattttagtattattatccctccttacacacacttatgattaaactcaaaatta 5526468  T
Q  408 ------aacataaaatattttttaattcattcactttctctcatcttcatc 452  Q
          ||||||||||| |  |||||||||||||||||| ||||| |||||    
T  5526469 aagtccaacataaaatactccttaattcattcactttctgtcatcatcatc 5526519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 313
Target Start/End: Complemental strand, 3919987 - 3919883
Alignment:
Q  209 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 308  Q
    ||||||||||||  || |||| ||| |||||| ||||  |||||||  |||||||| | ||||||||||| ||||||||||||| |  ||||| |||| |    
T  3919987 caaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatctagtttggtttggttcttaatttttaattttg 3919888  T
Q  309 agatc 313  Q
    |||||    
T  3919887 agatc 3919883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 10721926 - 10721977
Alignment:
Q  194 atgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtt 245  Q
    |||||| ||||| |||||||||||||| |||| ||||||| |||||||||||    
T  10721926 atgaaaccgaaaatccaaaccgaaaaagtatctgaccttgtttggttcggtt 10721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 12894100 - 12894051
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac 213  Q
    |||||||||| ||||||||  |||||||||| |||||| |||||||||||    
T  12894100 gtaggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaac 12894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 165 - 453
Target Start/End: Complemental strand, 7352555 - 7352258
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa----------ccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    ||||||||||| ||||||  |||||||||| |||| ||||||||||||          ||||||||||||||||| ||  |||||| |||||||||||||    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  255 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 354  Q
    | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgataaccacactcctt 7352357  T
Q  355 attttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatcttcatct 453  Q
    ||||||||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  7352356 attttactaatattatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatccattcactttctctcatcttcatct 7352258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 165 - 453
Target Start/End: Original strand, 46993258 - 46993552
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    |||||||| |||||||||| |||||| | ||||||| |||||| |||| | ||||||||| |||||||| |||| |||||||||||  ||| |||| |||    
T  46993258 taggggtggaagtggttcggacaaaatcgatgaaattgaaagttcaaatctaaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaa 46993357  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46993358 tcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaatccgatgataaccacactccttattttactaa 46993457  T
Q  365 tattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatct 453  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||      ||||||||||| |||||||| |||||| ||||||||||||||||||    
T  46993458 tattatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaacataaaatactttttaatccattcaatttctctcatcttcatct 46993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 165 - 447
Target Start/End: Original strand, 39695087 - 39695370
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa-----accgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcga 259  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||     |||||| | ||||||||||||| |||||||||||||||||||||  ||    
T  39695087 taggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaacccaaaccgaagagatatccgaccttgtttggttcggtttgaaaccgatctga 39695186  T
Q  260 accaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatttt 359  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  39695187 accaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgataacctcactccttatttt 39695286  T
Q  360 actaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaattcattcactttctctcatct 447  Q
    ||    |||||| |||||||||||||||||||||||  ||||||||||||||||||||| ||||| || |||||| ||||||||||||    
T  39695287 ac----attatcttacctcacacaaacttatggttagacccaaaattaaacataaaataatttttcatccattcattttctctcatct 39695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 165 - 442
Target Start/End: Original strand, 7994955 - 7995234
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    |||||||||||  ||||||||  ||||||| ||||  || ||||||||| ||||||||||  ||||||| |||||||||||  ||| |||| ||||||||    
T  7994955 taggggtgtaaacggttcgtattaaaccaacgaaactgatagtccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaa 7995054  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    | |||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7995055 ttgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaaccgatgaaccaatccgataataaccacactccttattttactaa 7995154  T
Q  365 tattatcctacctcacacaaacttatggttatgcccaaaatta-----aacataaaatattttttaattcattcactttctct 442  Q
    ||||||| |||||  |||||||||||||||| | |||||||||     |||||| |||| |||||||| |||||| |||||||    
T  7995155 tattatcttacct--cacaaacttatggtta-ggccaaaattaaagtcaacatagaatactttttaatccattcattttctct 7995234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 343
Target Start/End: Complemental strand, 11727449 - 11727326
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcga 309  Q
    |||||||||||||||  ||||||| ||||||||||||||||||          |||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaacc----------aatcaaaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  310 gatccgtgaaaccgatgaaccaatccgatgataa 343  Q
    ||||||| |||||||| |||||||||||||||||    
T  11727359 gatccgtaaaaccgataaaccaatccgatgataa 11727326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 408
Target Start/End: Complemental strand, 46265436 - 46265238
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    ||||||| ||||  ||||||||||||   |||||||||  |||||||  |||| ||||| ||||||||||  ||||||||||||    |||| ||||||     
T  46265436 ccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtttggttttcagtttgtcatttt 46265337  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    |||||||  ||||||||||||||||  | ||| ||||  ||||||| ||||||||| |||| |||| ||||||||  ||||||| |||||||||||||||    
T  46265336 gagatccaagaaaccgatgaaccaaatcaatgttaactccactcctcattttactattattgtccttcctcacac--acttatgattatgcccaaaatta 46265239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 455
Target Start/End: Complemental strand, 3997128 - 3996825
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||          |||||| ||  ||||||| ||| |||||| ||||  |||||||    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  255 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 354  Q
      | |||||||| ||||| | ||  ||||||| ||||| | | ||||||||| |||||||  | |||| ||||||| | ||| || ||||  ||||||      
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc-tcggttttcattttgagatccaaggaacctatgaaccgaaccgttggtaactccactccca 3996930  T
Q  355 attttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa------cataaaatattttttaattcattcactttctctcatctt 448  Q
    |||||||||||| || |   ||||||||  ||||||| |||||||||||||||||      ||||||||| || |||| |||||||||||||||| || |    
T  3996929 attttactaataataactctcctcacac--acttatgattatgcccaaaattaaagtcaagcataaaatacttcttaagtcattcactttctctcgtcat 3996832  T
Q  449 catctca 455  Q
    |||||||    
T  3996831 catctca 3996825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 388
Target Start/End: Complemental strand, 2197775 - 2197623
Alignment:
Q  236 tggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcc 335  Q
    ||||||||||  ||||||||  ||||||||| ||| ||| ||  |||| || |||||  |||||||||||| |||||||  ||||||||| |||||| ||    
T  2197775 tggttcggttctaaaccgatctgaaccaatctaaatcgaccttgtttgattgggttctcggtttttcattttgagatccaagaaaccgatcaaccaaacc 2197676  T
Q  336 gatgataaccacactccttattttactaatattatcctacctcacacaaactt 388  Q
    |||| ||||  ||||||  ||||||||||||||||||| |||| |||| ||||    
T  2197675 gatgctaacttcactccccattttactaatattatccttcctcgcacacactt 2197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 453
Target Start/End: Original strand, 48070669 - 48070918
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcga 309  Q
    ||||| |||||||||||||||||| ||| || ||||  |||||||  ||||| || | ||||||||||| |||| || |||||  ||||||| |||| ||    
T  48070669 aaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccgaaccgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttga 48070768  T
Q  310 gatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta-- 407  Q
    |||||    ||||||| |||  | |||||| ||||| |||||   |||| | ||||| |||||  | ||||||| ||||||| |||  | ||||||||      
T  48070769 gatccaaagaaccgataaactgaaccgatgttaacctcactcaccatttcagtaataatatccctcttcacacacacttatgattaatctcaaaattaaa 48070868  T
Q  408 ----aacataaaatattttttaattcattcactttctctcatcttcatct 453  Q
        ||||||||||| || |||||||||||||||||| ||||| ||||||    
T  48070869 gtccaacataaaatacttcttaattcattcactttctttcatcctcatct 48070918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 27227089 - 27227036
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa 218  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaa 27227036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 372
Target Start/End: Original strand, 31136158 - 31136357
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    ||||||||||| ||||||| || ||||| |||| | | ||   ||||||||||||| |||||||||||| ||| |||||||  ||||     ||||||||    
T  31136158 taggggtgtaaatggttcggacgaaaccgatgacaccaaa---ccaaaccgaaaaagtatccgaccttgtttgattcggttcaaaac-----cgaaccaa 31136249  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
     | ||||| || || ||||||||||||| ||||||   ||||||||||||    |||||||||||| | |||||| ||| | ||||| | ||| || |||    
T  31136250 cctaaaccaatataatttggtttggttcttggtttcaaatttcgagatccaaagaaccgatgaaccgaaccgatgctaaactcactcatcattatagtaa 31136349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 409
Target Start/End: Complemental strand, 35738178 - 35738067
Alignment:
Q  296 gtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggtta 395  Q
    ||||||||||| |||||||  | ||||||| |||||| | |||  ||||| ||||||  ||||||||||||||||||  | ||||||  ||||||| |||    
T  35738178 gtttttcattttgagatccaaggaaccgatcaaccaaactgattgtaaccccactccccattttactaatattatccctcatcacac--acttatgatta 35738081  T
Q  396 tgcccaaaattaaa 409  Q
     |||||||||||||    
T  35738080 ggcccaaaattaaa 35738067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 409
Target Start/End: Complemental strand, 25545332 - 25545139
Alignment:
Q  216 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||| ||| |||||||| |||||||||||  |||||||    |||||| | ||||||||||| |||||||||||||     |||| ||||  | ||||     
T  25545332 aaaaagtattcgaccttgattggttcggttcaaaaccgaactaaaccaacctaaaccgatctagtttggtttggttctcaacttttaattttaaaatcca 25545233  T
Q  316 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
       |||| ||||| | | || ||| ||||| ||||||  |||||| |||||||||||| ||||||| | ||||||| ||| || ||||||||||    
T  25545232 aagaaccaatgaatcgaaccaatgctaacctcactccccattttagtaatattatcctgcctcacatacacttatgattaagctcaaaattaaa 25545139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 208 - 455
Target Start/End: Complemental strand, 28319423 - 28319176
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||| | |||||||||| ||| |||| || ||||||||||||||||||||||||||||    
T  28319423 ccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttcatttc 28319324  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    ||||| |||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28319323 gagattcgtgaacctgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta 28319224  T
Q  408 aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    ||||||||||||||||||||  |||||||||||||||| |||||||||    
T  28319223 aacataaaatattttttaatcaattcactttctctcattttcatctca 28319176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 164 - 453
Target Start/End: Complemental strand, 23108098 - 23107789
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 253  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||          |||||||||||||||| |||||| ||||||||||||    
T  23108098 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccg 23107999  T
Q  254 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacc----aatccgatgataaccacac 349  Q
    || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| ||    
T  23107998 atccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccgatgataaccatac 23107899  T
Q  350 tccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||      ||||||||||| |||||||| ||||||||||||||     
T  23107898 tccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctcta 23107799  T
Q  444 atcttcatct 453  Q
    ||| ||||||    
T  23107798 atcatcatct 23107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 208 - 448
Target Start/End: Complemental strand, 24466448 - 24466202
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||     
T  24466448 ccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcatttt 24466349  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  24466348 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaatta 24466249  T
Q  408 ------aacataaaatattttttaattcattcactttctctcatctt 448  Q
          ||||||||||| |||||||| ||||||||||||||||||||    
T  24466248 aagtccaacataaaatactttttaatccattcactttctctcatctt 24466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 216 - 382
Target Start/End: Original strand, 4413515 - 4413681
Alignment:
Q  216 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  4413515 aaaaaatatccgatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccg 4413614  T
Q  316 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacac 382  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4413615 tgaaaccgataaaccaatccgatgataatcacactccttattttactagtattatcctacctcacac 4413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 455
Target Start/End: Original strand, 42141257 - 42141545
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccg-aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 263  Q
    |||||| |||||||||| | |||||||| |||||| ||||| ||||||||| ||||||||| |||||||  |||||||||||  |||||||   |||| |    
T  42141257 taggggcgtaagtggttaggacaaaaccgatgaaaccgaaaatccaaaccgaaaaaaatattcgaccttctttggttcggttcaaaaccgaactgaacaa 42141356  T
Q  264 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 363  Q
    | | ||| ||||||| ||||||| ||||| |||||||| |||| |||||||   |||     ||||| | |||||| ||| | ||||||| |||||| ||    
T  42141357 acctaaatcgatctactttggttcggttcttggtttttaattttgagatcc---aaa-----gaaccgaaccgatgctaaactcactcctcattttagta 42141448  T
Q  364 atattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    ||||||| |  ||||||||| ||||||| |||  | ||||||||      ||||||||||| |  |||| | ||||||||||||||||| ||||||||    
T  42141449 atattatacctcctcacacacacttatgattaatctcaaaattaaagtccaacataaaatactccttaa-tgattcactttctctcatcatcatctca 42141545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 367
Target Start/End: Complemental strand, 8606265 - 8606106
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    ||||||||||||| ||||| || ||| |||| ||||||  ||||| | ||||||||||| ||||||||||   |||||| |||||   |||||||||||     
T  8606265 ccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatcgaaccaatctaaaccgatcttggttggttcggttctcagtttttcatttt 8606166  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatat 367  Q
    |||||||  | |||| ||||| | | |||||| ||||||||||||  |||||||||||||    
T  8606165 gagatccaaggaaccaatgaatcgaaccgatggtaaccacactccccattttactaatat 8606106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 409
Target Start/End: Complemental strand, 53393337 - 53393087
Alignment:
Q  169 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccgattcg 258  Q
    ||||||||||||||| |||||||| |||||| ||||| |||||||||||          ||| |||||||||||| |||||||||||| |||| ||  ||    
T  53393337 ggtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccg 53393238  T
Q  259 aaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattt 358  Q
    |||||| | ||||||||||| ||||||| |||||  ||||| | | || || ||||    |||||||||||| | |||||| ||||| ||||    ||||    
T  53393237 aaccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccgaaccgatgctaacctcactttccattt 53393138  T
Q  359 tactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
    || |||||||||||  | ||||||| |||| || ||| || ||||||||||    
T  53393137 tagtaatattatccctcttcacacacacttctgattaagctcaaaattaaa 53393087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 13207547 - 13207472
Alignment:
Q  170 gtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtt 245  Q
    ||||||| |||||| |||||||| |||||||||||| |||||||||||||| |||| || |||| |||||||||||    
T  13207547 gtgtaagcggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaaaagtatctgatcttgtttggttcggtt 13207472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 8056816 - 8056939
Alignment:
Q  259 aaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattt 358  Q
    |||||||| ||||||| ||  ||||||| ||||| | | ||||||||| |||||||  |||||||||||||  | |||||  ||||| ||||||  ||||    
T  8056816 aaccaatctaaaccgaacttgtttggttcggttc-tcgattttcattttgagatccaagaaaccgatgaactgaaccgatcctaaccccactccccattt 8056914  T
Q  359 tactaatattatcctacctcacaca 383  Q
    ||||||||||||||| |||||||||    
T  8056915 tactaatattatccttcctcacaca 8056939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 409
Target Start/End: Complemental strand, 19682091 - 19682001
Alignment:
Q  319 aaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
    |||||||||||||| |||||| ||||| |||| || |||||| |||||||||||   |||||| | ||||| | ||| || ||||||||||    
T  19682091 aaccgatgaaccaaaccgatgctaacctcacttctcattttagtaatattatcccttctcacatacacttacgattaagctcaaaattaaa 19682001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 39839153 - 39839104
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaacc 214  Q
    ||||||||||||||||||| || ||||| |||||| ||||| ||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaacc 39839104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 208 - 448
Target Start/End: Complemental strand, 713 - 467
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||     
T  713 ccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcatttt 614  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  613 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggctcaaaatta 514  T
Q  408 ------aacataaaatattttttaattcattcactttctctcatctt 448  Q
          ||||||||||| |||||||| ||||||||||||||||||||    
T  513 aagtccaacataaaatactttttaatccattcactttctctcatctt 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 208 - 427
Target Start/End: Original strand, 19947761 - 19947980
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||| | ||||||||||| | |||||| |||| |||||||||||||||||||||||    
T  19947761 ccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttcatttc 19947860  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta 407  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19947861 aagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaatta 19947960  T
Q  408 aacataaaatattttttaat 427  Q
    ||||||| ||| ||||||||    
T  19947961 aacataagatactttttaat 19947980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 214 - 405
Target Start/End: Complemental strand, 16746548 - 16746357
Alignment:
Q  214 cgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatc 313  Q
    ||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  314 cgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaat 405  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16746448 cgtgaaatcgatgaaccaatccgatgataacctcactccttattttactaatattatcctacctcacacaaacttatggttaggcccaaaat 16746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 165 - 447
Target Start/End: Original strand, 31895896 - 31896181
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||          |||||||||||||||||||||| ||||||||||||||||||||    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  255 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 354  Q
    |  ||||||||| ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||             |||||||||||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaa-------------ccgatgataaccacactcctt 31896082  T
Q  355 attttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatct 447  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||| |||| |||||||||||||||||||    
T  31896083 attttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaagtccaacataaaatattttataatccattcactttctctcatct 31896181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 165 - 331
Target Start/End: Complemental strand, 16746726 - 16746550
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    ||||| ||||||||||||| |||||||||| |||| |||||||| ||||||||          ||||||||| |||||| ||||||||||||||||||||    
T  16746726 tagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16746627  T
Q  255 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaacca 331  Q
    | | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  16746626 tccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 406
Target Start/End: Complemental strand, 1498326 - 1498129
Alignment:
Q  209 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 308  Q
    ||||| || |||||||||||||||| |||||||||||  |||||||   ||||||| | |||||||| || ||  |||||||||   || ||| |||| |    
T  1498326 caaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatgtagttaagtttggttctcagtattttattttg 1498227  T
Q  309 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatt 406  Q
    ||||||   ||||||||||||| | |||||| ||||   |||||  |||||| |||||||||||   ||| |||| ||||||| ||| || |||||||    
T  1498226 agatccaataaaccgatgaaccgaaccgatgctaacatgactccccattttagtaatattatcccttctcgcacacacttatgattaagctcaaaatt 1498129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 41092163 - 41092105
Alignment:
Q  175 agtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttg 233  Q
    ||||||||| ||||||||||||||| |||||||| |||| |||||  |||| |||||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaactgaaaaggtatctgaccttg 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 216 - 408
Target Start/End: Original strand, 46655576 - 46655768
Alignment:
Q  216 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccg 315  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  46655576 aaaaaatatccgaccttacttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccg 46655675  T
Q  316 tgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaa 408  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46655676 tgaaaccgatgaaccaatccaatgataaccacacttcttattttactaatattatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 168 - 455
Target Start/End: Original strand, 44471020 - 44471323
Alignment:
Q  168 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccgattc 257  Q
    |||||||||||||||| |||||||| |||||||||||| |||||          ||||||||  |||||||||||| || ||||||||  |||||||  |    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  258 gaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttatt 357  Q
     |||||||| ||||||||||| ||||||| ||||| |||||||| |||| || ||||    |||||||||||| | |||||| ||||   |||||  | |    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgatgctaacataactccccagt 44471219  T
Q  358 ttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcat 451  Q
    ||| |||||||||||  ||||| ||| ||||||| ||| || ||||||||      ||||||||||| |   |||||||||||||||||| |||  ||||    
T  44471220 ttagtaatattatccctcctcaaacacacttatgattaagctcaaaattaaaggctaacataaaatactccataattcattcactttctcccattatcat 44471319  T
Q  452 ctca 455  Q
    ||||    
T  44471320 ctca 44471323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 383
Target Start/End: Complemental strand, 11503459 - 11503284
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    ||||||| ||||  ||||||||||||  ||||  ||||  |||||||  |||||||||||||||||||||  |||||||||||||  | ||||||||||     
T  11503459 ccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccgaaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcatttt 11503360  T
Q  308 gagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacaca 383  Q
    |||||||  ||||||||| |||| | || ||| ||||| ||||||  ||||||||| ||||||||  |||||||||    
T  11503359 gagatccaagaaaccgataaaccgaacccatgctaacctcactccccattttactattattatccctcctcacaca 11503284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 30554670 - 30554588
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 292  Q
    ||||||||||| |||||||||||| || ||||||||  ||| |||  |||||||||| ||||||||||| ||||||| |||||    
T  30554670 aaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcgaaccgaaccaatctaaaccgatctagtttggttcggttc 30554588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 452
Target Start/End: Complemental strand, 44682129 - 44681881
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg-aaaccgatctattttggtttggttcatggtttttcatttcg 308  Q
    ||||||||||| ||| |||||||| ||||||||| |  |||||||   ||||||| |  ||||||||||| ||||||||||||| |||||||| |||| |    
T  44682129 aaaccgaaaaagtatacgaccttgtttggttcggatcaaaaccgaactgaaccaaacctaaaccgatctagtttggtttggttcttggtttttaattttg 44682030  T
Q  309 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta- 407  Q
    | |||||   ||||||  |||| | |||||| ||||| |||| |  | || | |||||||||||   |||||||| ||||||| ||| || ||||||||     
T  44682029 aaatccgatgaaccgacaaaccgaaccgatgctaacctcacttccca-ttgagtaatattatccgttctcacacacacttatgattaagctcaaaattaa 44681931  T
Q  408 -----aacataaaatattttttaattcattcactttctctcatcttcatc 452  Q
         ||||||||||| |  |||||||||| |||||||| |||| |||||    
T  44681930 agtccaacataaaatactccttaattcatttactttctcccatcatcatc 44681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 46892657 - 46892703
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  46892657 ccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaaccga 46892703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcattt 306  Q
    ||||||||||| ||||| |||||| || ||||||||  |||| || ||||||||| | ||||| ||||| ||||||| ||||| |||||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 455
Target Start/End: Original strand, 26757593 - 26757901
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaacc----------gaaaaaatatccgaccttgcttggttcggtttgaaaccga 254  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||| |          |||||| ||| |||| ||| ||||||  |||| |||| ||    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  255 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcctt 354  Q
      |||||||| | ||| |||| ||  |||||| ||||| ||| |||| |||| |||||||    || |||| |||  | |||||  ||||| |||||       
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatccaaagaatcgataaactgaaccgatagtaacctcactctcc 26757792  T
Q  355 attttactaatattatcctacctcacacaaac--ttatggttatgcccaaaattaaa------cataaaatattttttaattcattcactttctctcatc 446  Q
    |||||| |||||||||||| || |||||| ||  ||||| ||| || ||||||||||      ||||||||| |  ||||||||||||||||||||||||    
T  26757793 attttagtaatattatccttccacacacacacacttatgattaagctcaaaattaaagttcaacataaaatactccttaattcattcactttctctcatc 26757892  T
Q  447 ttcatctca 455  Q
     ||||||||    
T  26757893 atcatctca 26757901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 46892755 - 46892884
Alignment:
Q  324 atgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaat 417  Q
    ||||||||| |||||| ||||| ||||||| |||||| |||||||||||  | ||||||| ||||| | ||   | ||||||||      ||||||||||    
T  46892755 atgaaccaaaccgatgctaacctcactcctcattttagtaatattatccctcatcacacacacttacgattgatctcaaaattaaagttcaacataaaat 46892854  T
Q  418 attttttaattcattcactttctctcatct 447  Q
    | |  |||||||||||||||||||||||||    
T  46892855 actccttaattcattcactttctctcatct 46892884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 455
Target Start/End: Original strand, 28550497 - 28550749
Alignment:
Q  209 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcg 308  Q
    |||||||||||| ||||  || ||| |||||||||||  || ||||  ||||||||   |||| |||||| ||||||| | |||  ||||||| |||| |    
T  28550497 caaaccgaaaaagtatctaactttgtttggttcggttcaaatccgaaccgaaccaacttaaacggatctagtttggttcgattctcggtttttaattttg 28550596  T
Q  309 agatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta- 407  Q
    |||||     |||||||||||| |  ||||| ||||| |||||| ||||||   |||||||||   ||||||||| ||||||| |||  | ||||||||     
T  28550597 agatctaaagaaccgatgaaccgaatcgatgttaacctcactccctattttggcaatattatctctcctcacacacacttatgattaaactcaaaattaa 28550696  T
Q  408 -----aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
         ||| ||||||| || | ||||||||||||||||| |||| ||||||||    
T  28550697 agtccaacgtaaaatacttctcaattcattcactttctcccatcatcatctca 28550749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 372
Target Start/End: Original strand, 22240516 - 22240724
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 263  Q
    |||| |||||||| | ||||  ||||||| |||||||||||||  |||||||||||| ||||||||| ||  ||||| ||||   || |||  |||||||    
T  22240516 gtagtggtgtaagcgattcggtcaaaaccgatgaaatcgaaaggtcaaaccgaaaaagtatccgaccatgtctggttaggttcataatcgaaccgaacca 22240615  T
Q  264 atcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacta 363  Q
    | | ||| ||| ||   | |||| | |||  |||||| ||||| |||||||  | ||||||| |||||| |||||||||| | |||||  |||||| |||    
T  22240616 aactaaatcgaccttgctgggttcgattctcggttttacattttgagatccaaggaaccgataaaccaaaccgatgataatctcactctctatttttcta 22240715  T
Q  364 atattatcc 372  Q
    ||| |||||    
T  22240716 atactatcc 22240724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 44285615 - 44285691
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtt 286  Q
    |||||||||||||||  ||||||| |||||||||||  |||||||  |||||||| | ||| |||| || |||||||    
T  44285615 aaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 47831317 - 47831242
Alignment:
Q  297 tttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcct 373  Q
    ||||| |||| |||||||   ||||| ||||||||| |||||| ||||| ||||||  |||||||||||||||||||    
T  47831317 ttttttattttgagatccaaaaaacctatgaaccaaaccgatgttaacc-cactcccaattttactaatattatcct 47831242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 172 - 453
Target Start/End: Complemental strand, 2013 - 1729
Alignment:
Q  172 gtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaac 271  Q
    |||||||||||| |||||| ||| |||| | ||||| ||||  ||||||||||||||||||| |||||||||||||||| ||||  ||||||||| ||||    
T  2013 gtaagtggttcggacaaaatcaacgaaaccaaaagttcaaattgaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaac 1914  T
Q  272 cgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatc 371  Q
     |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  1913 tgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaatccgatgataacaacactccttattttactaatattatt 1814  T
Q  372 ctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaattcattcactttctctcatcttcatct 453  Q
    ||||||  |||||||||||||||| |   |||||||      ||||||||||| |||||||| |||||||||||||||||| ||||||    
T  1813 ctacct--cacaaacttatggtta-ggttaaaattaaaatccaacataaaatactttttaatccattcactttctctcatcatcatct 1729  T

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Target: scaffold0070 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 165 - 409
Target Start/End: Original strand, 13756 - 14000
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 264  Q
    |||||||||||| |||||| |||||| ||||||||   ||||||||||||| |||  ||| ||||||||  |||||| |||  ||| |||  ||||||||    
T  13756 taggggtgtaagcggttcggacaaaatcaatgaaactaaaagtccaaaccggaaatgtattcgaccttgtctggttcagttcaaaatcgaaccgaaccaa 13855  T
Q  265 tcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 364  Q
    || |||| |||||  ||||||||||||   |||||||||||| |||||||   ||||||||||| | | |||||| ||||| ||||||  |||||||||     
T  13856 tctaaactgatcttatttggtttggttatcggtttttcattttgagatccaataaaccgatgaatcgaaccgatgctaacctcactccccattttactat 13955  T
Q  365 tattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
    |||||| |  | ||||||| |||||||  ||||||||||||||||    
T  13956 tattatacctcttcacacacacttatgagtatgcccaaaattaaa 14000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 33729 - 33776
Alignment:
Q  165 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 212  Q
    ||||||||||||||||||| | |||||||||||||  |||||||||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaa 33776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 409
Target Start/End: Original strand, 11846307 - 11846494
Alignment:
Q  222 tatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaac 321  Q
    |||||||||||| |||||| ||||  |||||||   |||||||   ||||||||||| ||||||| |||||  ||||||| |||| |||||||    |||    
T  11846307 tatccgaccttgtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttctcggtttttaattttgagatccaatgaac 11846406  T
Q  322 cgatgaaccaatccgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa 409  Q
    | |||||||||   |||| || || ||||||  |||||| |||||||||||  ||||||||| ||||||| ||| || ||||||||||    
T  11846407 caatgaaccaaattgatgctatcctcactccccattttagtaatattatccctcctcacacacacttatgattaagctcaaaattaaa 11846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 455
Target Start/End: Original strand, 9826817 - 9827043
Alignment:
Q  235 ttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatc 334  Q
    |||||||||||  |||||||  ||||||||   ||||||||||| ||||||| | |||  ||||||| |||| || ||||    |||||||||||||| |    
T  9826817 ttggttcggttgaaaaccgaaccgaaccaacataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaac 9826916  T
Q  335 cgatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaatta------aacataaaatattttttaatt 428  Q
     |||| ||||| |||| |   ||||| |||||||||||  |||||||||  |||||| ||| || ||| ||||      ||||||||||| |  ||||||    
T  9826917 tgatgttaacctcacttcccgttttagtaatattatccctcctcacacacgcttatgattaagctcaatattaaagtccaacataaaatactccttaatt 9827016  T
Q  429 cattcactttctctcatcttcatctca 455  Q
    ||||||||||||| |||| ||||||||    
T  9827017 cattcactttctcccatcatcatctca 9827043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 455
Target Start/End: Original strand, 1208739 - 1208864
Alignment:
Q  336 gatgataaccacactccttattttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaa------cataaaatattttttaattc 429  Q
    |||| ||||| |||||||| |||||||||| ||||||  | ||||||| ||||||  ||| |||||||||||||      ||||||||| |  |||||||    
T  1208739 gatgctaaccccactccttgttttactaatgttatccctcttcacacacacttatcattaggcccaaaattaaagttcagcataaaatactacttaattc 1208838  T
Q  430 attcactttctctcatcttcatctca 455  Q
    |||||||||| |||||| ||||||||    
T  1208839 attcactttccctcatcatcatctca 1208864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 5416284 - 5416331
Alignment:
Q  408 aacataaaatattttttaattcattcactttctctcatcttcatctca 455  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  5416284 aacataaaatagtctttaattcattcactttctctcatcatcatctca 5416331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 23301464 - 23301570
Alignment:
Q  208 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatttc 307  Q
    |||||||||||||  || |||||||| |||||||||||  |||||||  |||||||| | |||| |||||| ||||||| |||||   |||||| ||||     
T  23301464 ccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttggttcggttctcagtttttaatttt 23301563  T
Q  308 gagatcc 314  Q
    |||||||    
T  23301564 gagatcc 23301570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 23585862 - 23585990
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 263  Q
    |||||||||||||| ||| | |||||||| ||||||  |||| || |||  |||||| |||||||||||| || ||||||||  |||||||  | ||| |    
T  23585862 gtaggggtgtaagtagtttggacaaaaccgatgaaactgaaaatctaaatagaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaacta 23585961  T
Q  264 atcgaaaccgatctattttggtttggttc 292  Q
    |   |||||||| || |||||||||||||    
T  23585962 acgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 2454036 - 2453993
Alignment:
Q  408 aacataaaatattttttaattcattcactttctctcatcttcat 451  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||    
T  2454036 aacataaaatatttcttaattcattcactttctcccatcatcat 2453993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 26186634 - 26186588
Alignment:
Q  407 aaacataaaatattttttaattcattcactttctctcatcttcatct 453  Q
    |||| ||||||| | ||||||||||||||||||||||||| ||||||    
T  26186634 aaacttaaaatactctttaattcattcactttctctcatcatcatct 26186588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 344518 - 344452
Alignment:
Q  164 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgacc 230  Q
    |||||||||||||||||||| ||||||   |||||| ||||| |||||||| ||||| ||| |||||    
T  344518 gtaggggtgtaagtggttcggacaaaagtgatgaaaccgaaaatccaaaccaaaaaagtattcgacc 344452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 6366 - 6472
Alignment:
Q  210 aaaccgaaaaaatatccgaccttgct----tggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttcatt 305  Q
    ||||||||||| |||||||||| |||    ||||||||||| |||  || ||||||||| | ||||||||||| |||| | ||||||  ||||||| |||    
T  6366 aaaccgaaaaagtatccgacctagctagtttggttcggtttaaaattgaatcgaaccaacctaaaccgatctagtttgatctggttctcggtttttaatt 6465  T
Q  306 tcgagat 312  Q
    | |||||    
T  6466 ttgagat 6472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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