View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_14 (Length: 443)
Name: NF2566_low_14
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 112 - 427
Target Start/End: Complemental strand, 29528055 - 29527741
Alignment:
| Q |
112 |
tcttcaaaaatccataacaagcaaatcatgaccacaaaatactcttttagttttaggtagtagtatttaatatagtttagggnnnnnnnntaataataat |
211 |
Q |
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| T |
29528055 |
tcttcaaaaatccataacaagcaaatcatgaccacaaaatactcttttagttttaggtagtagtatttgatatagtttagggaaaaaaa-taataataat |
29527957 |
T |
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| Q |
212 |
ttgggtcttaccatgaggcttggagtaagcatgtgccccaccagcaccaccagtagagtaccttgcataacacttccccaagaacatatctccataatcc |
311 |
Q |
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| T |
29527956 |
ttgggtcttaccatgaggcttggagtaagcatgtgccccaccagcaccaccagtagagtaccttgcataacacttccccaagaacatatctccataatcc |
29527857 |
T |
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| Q |
312 |
ccagaagtacaatcatttctcaaccgtcggattgcctctgtaacacaatcttgacactccacaaaactcaaatccccaacacactgtgccattcccttca |
411 |
Q |
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| T |
29527856 |
ccagaagtacaatcatttctcaaccgtcggattgcctctgtaacacaatcttgacactccacaaaactcaaatccccaacacactgtgccattcccttca |
29527757 |
T |
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| Q |
412 |
attgacccgaaccacc |
427 |
Q |
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| T |
29527756 |
actgacccgaaccacc |
29527741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 29528161 - 29528114
Alignment:
| Q |
7 |
attctaatgagtaaccacaaatagatattcatagattaaccagattat |
54 |
Q |
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| T |
29528161 |
attctaatgagaaaccacaaatagatattcatagattaaccagattat |
29528114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 389
Target Start/End: Complemental strand, 33328009 - 33327878
Alignment:
| Q |
258 |
ccaccagtagagtaccttgcataacacttccccaagaacatatctccataatccccagaagtacaatcatttctcaaccgtcggattgcctctgtaacac |
357 |
Q |
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||||||||||| || ||||||||||| || |||||||||| |||||||||||| ||| | ||||||| || ||||||||| ||| || || ||||| |
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| T |
33328009 |
ccaccagtagaatatcttgcataacattttcccaagaacaaatctccataatctgcagtaccacaatcacttttcaaccgtccgatcgcttcaacaacac |
33327910 |
T |
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| Q |
358 |
aatcttgacactccacaaaactcaaatcccca |
389 |
Q |
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| T |
33327909 |
aatcttgacactccccaaaactaagatcccca |
33327878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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