View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_15 (Length: 430)
Name: NF2566_low_15
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 48365945 - 48365547
Alignment:
| Q |
18 |
agttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccgag |
117 |
Q |
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| T |
48365945 |
agttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttctttcaatgctccaattttctctgctggtgtcgtaaaatcaaccgag |
48365846 |
T |
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| Q |
118 |
aactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagct |
217 |
Q |
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| T |
48365845 |
aactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagct |
48365746 |
T |
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| Q |
218 |
tcaagaatactgttgtcaatatattcatttcttcaaccaatagctgccagataattcgatgcattaatacgtgaatctcaaaacagtaaaaataaattcg |
317 |
Q |
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| T |
48365745 |
tcaagaatactgttgtcaatatattcatttcttcaaccaatagctgccagataattcgatgcattaatacgtgaatctcaaaacagtaaaaataaattcg |
48365646 |
T |
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| Q |
318 |
gctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
416 |
Q |
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| T |
48365645 |
gctgctataagttacctcaacaccatctacaacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
48365547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 50 - 416
Target Start/End: Complemental strand, 48385456 - 48385088
Alignment:
| Q |
50 |
tagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccgagaactctataccttcagccatatttgggcttct |
149 |
Q |
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| T |
48385456 |
tagcttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaatcaaccgagaactctaccttttcaaccatatttgggcttct |
48385357 |
T |
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| Q |
150 |
gtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatactgttgtcaatatattcatttct |
249 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48385356 |
gtaataattgctaatcggtttagaggcgaggacagagtttggataatacaacttttcattattaagcttcaagaatactgttgtcaatatattcatctct |
48385257 |
T |
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| Q |
250 |
tcaaccaatagctgccagataatt-cgatgcattaatacgtgaatctcaaaacagtaaaaataaattcggctgct--ataagttacctcaacaccatcta |
346 |
Q |
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| T |
48385256 |
tcaaccaatagctgccagataattaaaaggcattaatacgtgaatctc-taacaacaaaattaaattcggcagctacagaagttacctcaacaccatcta |
48385158 |
T |
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| Q |
347 |
caacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
416 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
48385157 |
taacacaccgatcgccaacatcgaacggatgcattacaaacacgaagatgatggcttcaaaaatattctt |
48385088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 50 - 416
Target Start/End: Original strand, 48396656 - 48397024
Alignment:
| Q |
50 |
tagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccgagaactctataccttcagccatatttgggcttct |
149 |
Q |
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||||||||||| |||||||||| |||| || ||| ||||| ||||||| || ||||||||||| |||||||||| || ||| ||||||| |||||||| |
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| T |
48396656 |
tagcttacctctttattttttcattcagtgatccgattttctctgctgacgttgtaaaatcaactgagaactctacactgtcacccatattagggcttct |
48396755 |
T |
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| Q |
150 |
gtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatactgttgtcaatatattcatttct |
249 |
Q |
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| T |
48396756 |
gtaataattgctgatcggttttatggctaggacagagtttggataatacaccttttcattattaagtttcaagaatactgttgtcagtatgttcatttct |
48396855 |
T |
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| Q |
250 |
tcaaccaatagctgccagataa--ttcgatgcattaatacgtgaatctcaaaacagtaaaaataaattcggctgctataagttacctcaacaccatctac |
347 |
Q |
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||||||||||||||| |||||| || ||||||||||||| ||| |||||||| |||| |||| ||||||||||||| |||||||||||||||||| |
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| T |
48396856 |
tcaaccaatagctgcaagataattttgaatgcattaatacgcaaatatcaaaacaataaagttaaactcggctgctataaattacctcaacaccatctat |
48396955 |
T |
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| Q |
348 |
aacacaacgatcgccaacatcgaatggatgcattacaaagacgaagatgatggcttcaaatatattctt |
416 |
Q |
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|| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48396956 |
aaaacatcgatcgccaacatcaaatggatgcattacaaacacgaagatgatggcttcaaatatattctt |
48397024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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