View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_16 (Length: 424)
Name: NF2566_low_16
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 39846025 - 39846225
Alignment:
| Q |
48 |
ccacttgtaactcattcatggcctctgacttttgcatcaataacaaagctaattctaattggatataagattccattcttttgacatcttgaatcgacaa |
147 |
Q |
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| T |
39846025 |
ccacttgtaactcattcatggcctctgacttttgcatcaataacaaagctaattctaattggatataagattccattcttttgacatcttgaatcgacaa |
39846124 |
T |
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| Q |
148 |
cgcaaccatgttttgtgccatctgccttggagaagaagtttgcataaatcaacattagccagaactagaataataataatttgattgatgctgcgaacca |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
39846125 |
cgcaaccatgttttgtgccatctgccttggagaagaagtttgcataaatcaacattagctag---------aataataatttgattgatgctgagaacca |
39846215 |
T |
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| Q |
248 |
aggccgaaag |
257 |
Q |
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|||||||||| |
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| T |
39846216 |
aggccgaaag |
39846225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 283 - 406
Target Start/End: Complemental strand, 54197970 - 54197847
Alignment:
| Q |
283 |
agtaatactacaaaaaagtgcaaacttcaaaagtgtgttcttctcttaattgnnnnnnnnnnnatttcaatttgacaaattcaacaactactatgtgtat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54197970 |
agtaatactacaaaaaagtgcaaacttcaaaagtgtgttcttctcttaattgttttttttattatttcaatttgacaaattcaacaactactatgtgtat |
54197871 |
T |
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| Q |
383 |
caatactggaccagtaagcagtag |
406 |
Q |
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|||||||||||||||||||||||| |
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| T |
54197870 |
caatactggaccagtaagcagtag |
54197847 |
T |
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