View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2566_low_19 (Length: 373)

Name: NF2566_low_19
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2566_low_19
NF2566_low_19
[»] scaffold0743 (2 HSPs)
scaffold0743 (202-357)||(7-164)
scaffold0743 (202-357)||(321-478)
[»] scaffold0216 (1 HSPs)
scaffold0216 (14-178)||(15365-15523)
[»] chr8 (2 HSPs)
chr8 (202-342)||(21178293-21178436)
chr8 (106-162)||(11620776-11620832)
[»] chr4 (8 HSPs)
chr4 (15-174)||(10675305-10675458)
chr4 (15-174)||(10888945-10889098)
chr4 (15-174)||(10691365-10691518)
chr4 (15-174)||(10905131-10905284)
chr4 (202-338)||(18274235-18274374)
chr4 (14-174)||(6192239-6192392)
chr4 (202-342)||(48086762-48086906)
chr4 (108-162)||(7840942-7840996)
[»] scaffold0205 (1 HSPs)
scaffold0205 (202-342)||(3131-3274)
[»] chr5 (3 HSPs)
chr5 (202-342)||(28361003-28361145)
chr5 (15-151)||(11725333-11725463)
chr5 (280-332)||(16548007-16548059)
[»] chr7 (5 HSPs)
chr7 (202-341)||(12329408-12329549)
chr7 (106-174)||(3410022-3410090)
chr7 (202-342)||(25753206-25753349)
chr7 (18-92)||(20617589-20617663)
chr7 (58-91)||(26651832-26651865)
[»] chr6 (7 HSPs)
chr6 (15-174)||(16299048-16299201)
chr6 (202-338)||(32878782-32878921)
chr6 (34-92)||(27990528-27990586)
chr6 (202-311)||(1068664-1068775)
chr6 (137-174)||(10138525-10138562)
chr6 (106-151)||(27962402-27962447)
chr6 (188-264)||(2612814-2612890)
[»] scaffold0026 (2 HSPs)
scaffold0026 (202-331)||(71256-71387)
scaffold0026 (202-341)||(73288-73428)
[»] scaffold0009 (1 HSPs)
scaffold0009 (202-341)||(225088-225229)
[»] scaffold1752 (1 HSPs)
scaffold1752 (202-342)||(1139-1283)
[»] chr1 (1 HSPs)
chr1 (202-338)||(25607315-25607455)
[»] chr2 (5 HSPs)
chr2 (106-174)||(20477080-20477148)
chr2 (106-162)||(18417028-18417084)
chr2 (106-174)||(28697855-28697923)
chr2 (202-302)||(18031965-18032067)
chr2 (106-151)||(24524435-24524480)
[»] chr3 (2 HSPs)
chr3 (202-342)||(1731322-1731466)
chr3 (272-342)||(11984714-11984786)
[»] scaffold0134 (1 HSPs)
scaffold0134 (106-151)||(2148-2193)


Alignment Details
Target: scaffold0743 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 7 - 164
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaa--agatgaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  | ||||| ||||||| ||||||||||||||||||||    
T  7 cgtagtgtataatcacaagcttaaaaattcccttttcttaattcaagaatttcttaattaaaataaatgaaatgctttcgctttaaccttttcaattaaa 106  T
Q  300 aatccaaattttctaagtcggatattgttttcgctctttcgatctcgaatatggtttt 357  Q
    |||   ||||||| |||||||||||| |||| ||||||||||||| |||||| |||||    
T  107 aatttgaattttccaagtcggatattattttagctctttcgatctagaatattgtttt 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0743; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 321 - 478
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaaga--tgaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| |  |||| ||||||| ||||||||||||||||||||    
T  321 cgtagtgtataatcacaagcttaaaaattctctttttttaattcaagaatttcttaattaaaataaatgaaatgctttcgctttaaccttttcaattaaa 420  T
Q  300 aatccaaattttctaagtcggatattgttttcgctctttcgatctcgaatatggtttt 357  Q
    |||   ||||||| ||||||||||||||||||||||||| |||||||||||| |||||    
T  421 aatttgaattttccaagtcggatattgttttcgctcttttgatctcgaatattgtttt 478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 15365 - 15523
Alignment:
Q  14 gagagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaa 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||| |||||||||| ||             ||||||||    
T  15365 gagagtgtccagccaaacctcaccaaccatggaatgacccaaagcacctaacttgtttgcacaactatttccttcatggtatatat------gagaagaa 15458  T
Q  114 ataacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaaccagtaa 178  Q
    ||||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  15459 ataacctaaatcccaagattgtgagcattgtgccatctattacgtaacataataggaaccagtaa 15523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 21178293 - 21178436
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaag--atgaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||| ||| ||||||||||| | |||||||||||||| || ||||| ||||||||  | ||||||||||| ||||||||||||||||||||    
T  21178293 cgtagtgtataattacaggcttaaaaatttccttttcttaattcaataaattcttaattaaaagaaaagaagtgctttcgctttaaccttttcaattaaa 21178392  T
Q  300 aatc-caaattttctaagtcggatattgttttcgctctttcgat 342  Q
    ||||  || ||||||||||||||||| |||||||||||||||||    
T  21178393 aatctgaatttttctaagtcggatatcgttttcgctctttcgat 21178436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 11620776 - 11620832
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatctgctacgtaaca 162  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||  |||||||||    
T  11620776 gagaagcaattacctgaatccccagattgcgagcattgtgccatctattacgtaaca 11620832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 10675458 - 10675305
Alignment:
Q  15 agagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaaa 114  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||  ||||||||||||             |||||||||    
T  10675458 agagtgtcgagccaaacctcaccaaccatggaatgacccaaagcagccaacttatttgcgcaactgtttccttcacggtagatat------gagaagaaa 10675365  T
Q  115 taacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  10675364 taacctgaatcccaagattgcgagcactatgccatctgttacgtaacataataggaacca 10675305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 10889098 - 10888945
Alignment:
Q  15 agagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaaa 114  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||  ||||||||||||             |||||||||    
T  10889098 agagtgtcgagccaaacctcaccaaccatggaatgacccaaagcagccaacttatttgcgcaactgtttccttcacggtagatat------gagaagaaa 10889005  T
Q  115 taacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  10889004 taacctgaatcccaagattgcgagcactatgccatctgttacgtaacataataggaacca 10888945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 10691365 - 10691518
Alignment:
Q  15 agagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaaa 114  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||  ||||||||||||             |||||||||    
T  10691365 agagtgtcaagccaaacctcaccaaccatggaatgacccaaaccagccaacttatctgcgcaactgtttccttcacggtagatat------gagaagaaa 10691458  T
Q  115 taacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  10691459 taacctaaatcccaagattgcgagcactatgccatctgttacgtaacataataggaacca 10691518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 10905131 - 10905284
Alignment:
Q  15 agagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaaa 114  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||  ||||||||||||             |||||||||    
T  10905131 agagtgtcaagccaaacctcaccaaccatggaatgacccaaaccagccaacttatctgcgcaactgtttccttcacggtagatat------gagaagaaa 10905224  T
Q  115 taacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  10905225 taacctaaatcccaagattgcgagcactatgccatctgttacgtaacataataggaacca 10905284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 338
Target Start/End: Complemental strand, 18274374 - 18274235
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||| |||  |||||||||| |  ||||||||||||| || ||||| |||||||||   ||||||||||| ||||||||||||||||||||    
T  18274374 cgtagtgtataattacagtcttaaaaatttccctttcttaattcaataaattcttaattaaaagaaaagaagtgctttcgctttaaccttttcaattaaa 18274275  T
Q  300 aatc-caaattttctaagtcggatattgttttcgctcttt 338  Q
    ||||  || ||||||||||||||||| |||| ||||||||    
T  18274274 aatctgaatttttctaagtcggatatcgtttccgctcttt 18274235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 6192392 - 6192239
Alignment:
Q  14 gagagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaa 113  Q
    ||||||||| ||||||| ||| ||||| ||| ||| |||||||||||||||||| ||||| ||||| ||||||||||||             ||||||||    
T  6192392 gagagtgtcaagccaaatctctccaactatg-aatgacccaaagcagctaacttgtctgcgcaacagtttccttcacggaagatat------gagaagaa 6192300  T
Q  114 ataacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    ||||  ||||| ||||||||||||||||| ||||||||  ||||||||||||| |||||||    
T  6192299 ataatttgaattccaagattgcgagcattatgccatctattacgtaacataattggaacca 6192239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 48086906 - 48086762
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||| ||||||| ||| || |||||||||| |||||| ||||||| ||  |||| |||||||||   ||| |||||||||||||||| |||||||||||    
T  48086906 cgtagcgtataattacaggcctaaaaattcctttttctaaattcaataaactcttaattaaaagaaaagaaatgctttcactttaaccctttcaattaaa 48086807  T
Q  300 aa--tccaaattttctaagtcggatattgttttcgctctttcgat 342  Q
    ||  |   | |||| || ||||||||| |||||||||||||||||    
T  48086806 aacttgatatttttttatgtcggatatcgttttcgctctttcgat 48086762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 7840996 - 7840942
Alignment:
Q  108 gaagaaataacctgaatcccaagattgcgagcattgtgccatctgctacgtaaca 162  Q
    |||||||| |||||||||||||||||||||||||| | ||||||| |||||||||    
T  7840996 gaagaaattacctgaatcccaagattgcgagcatttttccatctgttacgtaaca 7840942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 3274 - 3131
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaag--atgaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||| ||| ||||||||||| | |||||||||||||| || ||||| ||||||||  |  ||||| ||| |||||||||||||||||||||    
T  3274 cgtagtgtataattacaggcttaaaaatttccttttcttaattcaataaattcttaattaaaagaaaataagtgtttttactttaaccttttcaattaaa 3175  T
Q  300 aatc-caaattttctaagtcggatattgttttcgctctttcgat 342  Q
    ||||  || ||||||||||||||||| |||||||||||||||||    
T  3174 aatctgaatttttctaagtcggatatcgttttcgctctttcgat 3131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 28361145 - 28361003
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||| ||| ||||||||||||| |||||||||||||| || ||||| |||||||||   ||||||||||  ||||||| ||||||||||||    
T  28361145 cgtagtgtataattacaggcttaaaaattcc-ttttcttaattcaataaattcttaattaaaagaaaagaagtgctttggctttaacattttcaattaaa 28361047  T
Q  300 aatccaaatttt-ctaagtcggatattgttttcgctctttcgat 342  Q
    ||||  |||||| ||||||||||||| |||||| ||||||||||    
T  28361046 aatctgaatttttctaagtcggatatcgttttctctctttcgat 28361003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 11725463 - 11725333
Alignment:
Q  15 agagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaaa 114  Q
    |||||| | |||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||  ||||||| | ||             |||||||||    
T  11725463 agagtgacaagccgaacctcaccaaccatggaatgacccaaagcagccaacttatctgcgcaactgtttcctttatgg------tagatatgagaagaaa 11725370  T
Q  115 taacctgaatcccaagattgcgagcattgtgccatct 151  Q
    ||||||||||||||||||||||||| || ||||||||    
T  11725369 taacctgaatcccaagattgcgagctttatgccatct 11725333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 16548007 - 16548059
Alignment:
Q  280 ctttaaccttttcaattaaaaatccaaattttctaagtcggatattgttttcg 332  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||    
T  16548007 ctttaaccttttcaattaaaaattcaaattttttaagttggatatcgttttcg 16548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 12329408 - 12329549
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaag--atgaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||  | ||||||||||||||  ||||||| |||||| |  ||||| || |||||  | ||| || |||| |||||||||| |||||||||    
T  12329408 cgtagtgtataactataagcttaaaaattctcttttcttgattcaatacattctttatcaaaaggaaagaaatgttttcgctttaaccttctcaattaaa 12329507  T
Q  300 aatccaaattttctaagtcggatattgttttcgctctttcga 341  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  12329508 aatccaaattttctaagtcggatatcgttttcactctttcga 12329549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 3410090 - 3410022
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    ||||||||||||||||||| |||||| |||||||||| |||||| || |||||||||||||||| ||||    
T  3410090 gagaagaaataacctgaattccaagaatgcgagcattatgccatttgttacgtaacataataggcacca 3410022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 25753349 - 25753206
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||| ||||||| ||| || |||||||||| |||||| ||||||| ||  |||| |||||||||   ||| ||||||| ||||||||| ||| ||||||    
T  25753349 cgtagcgtataattacaggcctaaaaattcctttttctaaattcaataaactcttaattaaaagaaaagaaatgctttcgctttaacctcttcgattaaa 25753250  T
Q  300 aa-tccaaattttctaagtcggatattgttttcgctctttcgat 342  Q
    || |  | ||||| || ||||||||| |||||||||||||||||    
T  25753249 aacttgatattttttatgtcggatatcgttttcgctctttcgat 25753206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 20617663 - 20617589
Alignment:
Q  18 gtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacgg 92  Q
    ||||| |||||||||||||||| ||||||||  ||||||  |||||| |||||||||||||| || |||||||||    
T  20617663 gtgtcaagccaaacctcaccaatcatggaatgccccaaattagctaatttatctgcacaacagttgccttcacgg 20617589  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 26651865 - 26651832
Alignment:
Q  58 cagctaacttatctgcacaacaatttccttcacg 91  Q
    ||||||||||||||||||||||||| ||||||||    
T  26651865 cagctaacttatctgcacaacaattaccttcacg 26651832  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 16299048 - 16299201
Alignment:
Q  15 agagtgtccagccaaacctcaccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacggnnnnnnnnnnnnngagaagaaa 114  Q
    |||||||| ||||||| ||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||| ||             | ||||| |    
T  16299048 agagtgtcaagccaaatctcaccaactatggaatgacccaaagcagctaacttgtcagcacaacaatttccttcatgg------aagatatgtgaagaga 16299141  T
Q  115 taacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    ||||| |||| |||| |||||| ||||||||||||||| ||||||||||||| |||||||    
T  16299142 taaccggaattccaatattgcgggcattgtgccatctgttacgtaacataatcggaacca 16299201  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 338
Target Start/End: Original strand, 32878782 - 32878921
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagatga--agtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||||| || ||||| |||||||||  |  |||| |||  ||||||||||||||||||||    
T  32878782 cgtagtgtataattacaggcttaaaaattcttttttcttaattcaataaattcttaattaaaagaaaataagtgtttttgctttaaccttttcaattaaa 32878881  T
Q  300 aatc-caaattttctaagtcggatattgttttcgctcttt 338  Q
    ||||  || |||| |||||||||| | |||||||||||||    
T  32878882 aatctgaatttttttaagtcggatgtcgttttcgctcttt 32878921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 27990586 - 27990528
Alignment:
Q  34 caccaaccatggaataacccaaagcagctaacttatctgcacaacaatttccttcacgg 92  Q
    ||||||||||||| ||||||| |  ||||||||||||||||||||| ||||||||||||    
T  27990586 caccaaccatggagtaacccatattagctaacttatctgcacaacagtttccttcacgg 27990528  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 1068775 - 1068664
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||| | ||||  ||||||||| | |||||||||||||| || ||||| || ||||||   ||| || |||| |||||||||| |||||||||    
T  1068775 cgtagtgtatagttacaaatttaaaaatttccttttcttaattcaataaattcttaatgaaaagaaaagaaatgttttcgctttaaccttctcaattaaa 1068676  T
Q  300 aatccaaatttt 311  Q
    |||| |||||||    
T  1068675 aatctaaatttt 1068664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 10138562 - 10138525
Alignment:
Q  137 agcattgtgccatctgctacgtaacataataggaacca 174  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10138562 agcattgtgccatctgttacgtaacataataggaacca 10138525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 27962402 - 27962447
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatct 151  Q
    |||||| ||| |||||||||| |||||| |||||||||||||||||    
T  27962402 gagaagcaatcacctgaatccaaagatttcgagcattgtgccatct 27962447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 2612890 - 2612814
Alignment:
Q  188 taactccctggtcacgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaa 264  Q
    |||||||||| |  |||||| |||| | | ||||||||||||||  |||||||||||||| || ||||| |||||||    
T  2612890 taactccctgcttccgtagtatatagttataagcttaaaaattctcttttcttaattcaataaattcttaattaaaa 2612814  T

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Target: scaffold0026 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 331
Target Start/End: Complemental strand, 71387 - 71256
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaag--atgaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||| | ||||||||||||||||  |||||||||||||| ||  |||| ||||||||  | ||||||||||| |||||| ||||||| |||||    
T  71387 cgtagtgtatatttacaagcttaaaaattctcttttcttaattcaataa-atcttaattaaaagaaaagaagtgctttcgctttaagcttttcatttaaa 71289  T
Q  300 aatc-caaattttctaagtcggatattgttttc 331  Q
    ||||  || ||||||||||||||||||||||||    
T  71288 aatctgaatttttctaagtcggatattgttttc 71256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 73428 - 73288
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||| | ||||||||| ||||||  |||||||||||||| || ||||| |||||| ||   ||| ||||||| ||| |||||||||||| |||    
T  73428 cgtagtgtatagttacaagcttagaaattctcttttcttaattcaacaaattcttaattaaatgaaaagaaatgctttcgctt-aaccttttcaatcaaa 73330  T
Q  300 aatccaaattttctaagtcggatattgttttcgctctttcga 341  Q
    |||   |||||| |||||||||||| ||||||||||||||||    
T  73329 aatttgaattttttaagtcggatatcgttttcgctctttcga 73288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 225088 - 225229
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaag---atgaagtgctttcactttaaccttttcaattaa 298  Q
    |||| |||||||| ||| ||||||||| ||| ||||||||||| || || |||||  ||||||    | ||||||||||| | |||||||||||||||||    
T  225088 cgtattgtataattacatgcttaaaaaatcccttttcttaatttaataaattcttagttaaaattaaaagaagtgctttcgcattaaccttttcaattaa 225187  T
Q  299 aaatccaaattttctaagtcggatattgttttcgctctttcga 341  Q
    |||||  | |||| |||||| ||||| ||||||||||||||||    
T  225188 aaatctgagttttgtaagtc-gatatcgttttcgctctttcga 225229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1752 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1752
Description:

Target: scaffold1752; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 1139 - 1283
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||| ||||||| ||| || |||||||| | |||||| ||||||| ||  |||| |||||||||   ||| ||||||| ||||||||||||||||||||    
T  1139 cgtagcgtataattacaggcctaaaaatttctttttctaaattcaataaactcttaattaaaagaaaagaaatgctttcgctttaaccttttcaattaaa 1238  T
Q  300 aa--tccaaattttctaagtcggatattgttttcgctctttcgat 342  Q
    ||  |   | ||||||| ||||||||| |||||||||||||||||    
T  1239 aacttgatatttttctatgtcggatatcgttttcgctctttcgat 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 338
Target Start/End: Original strand, 25607315 - 25607455
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||| ||||||| ||| || |||||||||| |||||| ||||||| ||  |||| |||||||||   ||| ||||||| ||||||||||||| ||||||    
T  25607315 cgtagcgtataattacaggcctaaaaattcctttttctaaattcaataaaatcttaattaaaagaaaagaaatgctttcgctttaaccttttctattaaa 25607414  T
Q  300 aa--tccaaattttctaagtcggatattgttttcgctcttt 338  Q
    ||  |   | ||||||||||||||||| |||||||||||||    
T  25607415 aacttgatatttttctaagtcggatatcgttttcgctcttt 25607455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 20477148 - 20477080
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    ||||||||||||||| ||||||||||||||||||||  ||| | ||| |||||||||||||||| ||||    
T  20477148 gagaagaaataacctaaatcccaagattgcgagcatcatgcaacctgttacgtaacataataggcacca 20477080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 18417084 - 18417028
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatctgctacgtaaca 162  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||  |||||||||    
T  18417084 gagaagcaattacctgaatccccagattgcgagcattgtgccatctattacgtaaca 18417028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 28697923 - 28697855
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatctgctacgtaacataataggaacca 174  Q
    ||||||||||||| ||||||||||| |||||  |||| |||||| || ||||||||||||| |||||||    
T  28697923 gagaagaaataacttgaatcccaaggttgcggccattatgccatatgttacgtaacataatcggaacca 28697855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 18031965 - 18032067
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagatga--agtgctttcactttaaccttttcaattaaa 299  Q
    ||||||||||||| ||  ||||| ||||||  |||||||||||||| |  ||||| |||||| || ||  |||| |||| ||||||||||||||||||||    
T  18031965 cgtagtgtataattacgggcttacaaattctcttttcttaattcaatagattcttaattaaaggaagagaagtgatttcgctttaaccttttcaattaaa 18032064  T
Q  300 aat 302  Q
    |||    
T  18032065 aat 18032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 24524435 - 24524480
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatct 151  Q
    |||||| ||| ||||||||||||||||| | |||||||||||||||    
T  24524435 gagaagcaatcacctgaatcccaagatttctagcattgtgccatct 24524480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 342
Target Start/End: Original strand, 1731322 - 1731466
Alignment:
Q  202 cgtagtgtataatcacaagcttaaaaattccattttcttaattcaagaatttcttgattaaaagat--gaagtgctttcactttaaccttttcaattaaa 299  Q
    ||||| ||||||| ||| || ||| |||| | |||||| ||||||| ||  |||| |||||||||   ||| ||||||| ||||||||||||||||||||    
T  1731322 cgtagcgtataattacaggcctaataatttctttttctaaattcaataaactcttaattaaaagaaaagaaatgctttcgctttaaccttttcaattaaa 1731421  T
Q  300 aa--tccaaattttctaagtcggatattgttttcgctctttcgat 342  Q
    ||  |   | ||||||| ||||||||| |||||||||||||||||    
T  1731422 aacttgatatttttctatgtcggatatcgttttcgctctttcgat 1731466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 11984786 - 11984714
Alignment:
Q  272 tgctttcactttaaccttttcaattaaaaa--tccaaattttctaagtcggatattgttttcgctctttcgat 342  Q
    ||||||| ||||||||||||| ||||||||  |   | ||||||||||||||||| |||||||||||||||||    
T  11984786 tgctttcgctttaaccttttctattaaaaacttgatatttttctaagtcggatatagttttcgctctttcgat 11984714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 2193 - 2148
Alignment:
Q  106 gagaagaaataacctgaatcccaagattgcgagcattgtgccatct 151  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||    
T  2193 gagaagcaattacctgaatccccagattgcgagcattgtgccatct 2148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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