View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_20 (Length: 367)
Name: NF2566_low_20
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 52237875 - 52237703
Alignment:
| Q |
19 |
tagctcccttccagagtctgtctgccagggaatagattttgttcttattggaattggaagtgttacttcgtattgttgtaac-----taatttcattgaa |
113 |
Q |
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| T |
52237875 |
tagctcccttccagagtctgtctgccagggaatagattttgttcttattggaattggaagtgttacttcgtattgttgtagctaatttaatttcattgaa |
52237776 |
T |
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| Q |
114 |
aaaatatataaatgagtgacttcactcaggtgtgcatacaaagcattttttgccgaataatatagaagtcatc |
186 |
Q |
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| T |
52237775 |
aaaatatataaatgagtgacttcactcaggtgtgcatacaaagcattttttgccgaataatatagaagtcatc |
52237703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 223 - 356
Target Start/End: Complemental strand, 52237661 - 52237528
Alignment:
| Q |
223 |
ttatgtattagcacagtaaatatatctacaggaaatgcacggcaacagagttcaagctggtctctctgtatcaactttttctgtctcttaattttctttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52237661 |
ttatgtattagcacagtaaatatatctacaggaaatgcacggcaacagagttcaagctggtctctctgtatcaactttttctgtctcttaattttctttg |
52237562 |
T |
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| Q |
323 |
tatttgtgatcattatttattgttcattattcat |
356 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52237561 |
tatttgtgatcattatttattgttcattattcat |
52237528 |
T |
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