View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_21 (Length: 358)
Name: NF2566_low_21
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 49664693 - 49664357
Alignment:
| Q |
15 |
tcagttagtatatgaaaaatatgagtgattcgtcctaacatccactatatttaagccatatgaccgatatatataacggtgactcacatactcaatcaat |
114 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49664693 |
tcagtaagtatacgaaaaatgtgagtgattcgtcctaacatccactatatttaagctatatgaccgatatatataacggtgactcacatactcaatcaat |
49664594 |
T |
|
| Q |
115 |
ctcttaaaattttgggtgaagatgtgatgtcccggttttttgatggtcctgatcattagtctattgtagctttcagactcccgcaatgtactttatgtta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49664593 |
ctcttaaaattttgggtgaagatgtgatgtcccggttttttgatggtcctgatcattagtctgttgtagctttcagactcccgcaatgtactttatgtta |
49664494 |
T |
|
| Q |
215 |
attacaccgttttcagactccccgacata-tttatgtatgttcattacgtagttttttcaaaactctcgtttgaatatatgattactgcactgcttatcc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49664493 |
attacaccgttttcagactccccgacatattttatgtatgttcattatgtagttttttcaaaactctcgtttgaatatatgattactgcactgcttatcc |
49664394 |
T |
|
| Q |
314 |
gaaaatttatgattctgccactaatctcattcatctc |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49664393 |
gaaaatttatgattctgccactaatctcattcatctc |
49664357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 50937929 - 50938105
Alignment:
| Q |
46 |
gtcctaacatccactatatttaagccatatgaccgatatatataacggtgactcacatactcaatcaatctcttaaaattttgggtgaagatgtgatgtc |
145 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| ||||||| | ||||||||| ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
50937929 |
gtcctgacatccactatgaataagctatatgaccaatatataga--ggtgactcatatactcaatt----tcttcgaattttgggtgaagatgtgatgtc |
50938022 |
T |
|
| Q |
146 |
ccggttttttg--atggtcctgatcattagtctattgtagctttcagactcccgcaatgtactttatgttaattacaccgtttt |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||||| ||||||| ||||||| ||| || ||||||||| ||||| |
|
|
| T |
50938023 |
ccggtttttttttatggtcctgatcattagtctgttgttgctttcggactcccccaatgta-tttttgataattacacagtttt |
50938105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University