View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_22 (Length: 350)
Name: NF2566_low_22
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 36935515 - 36935772
Alignment:
| Q |
4 |
ggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatatgtgcttcttttccttctatcaccatcaactagcaaccc |
103 |
Q |
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| T |
36935515 |
ggttgtccaatgtgtttctggttatggcactgatttttgtcgccgttgtgattttgttatatgtgcttcttttccttccatcaccatcaactagcaaccc |
36935614 |
T |
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| Q |
104 |
cttgtggtacatttctcattatccatatcnnnnnnnggcatcacgaactgaaagtaaacctgatcaag---gtgttaatccttggtcttagtgtaagtga |
200 |
Q |
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| T |
36935615 |
cttgcggtacatttctcattatccatatctttttttggcatcacgaactgaaagtaaacctgatcaaggtcgtgttaatccttggtcttagtgtaagtga |
36935714 |
T |
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| Q |
201 |
tgtattatggctaagtggggattcattaggtcattgaataagttaacccccctaaatt |
258 |
Q |
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| T |
36935715 |
tgtattatggctaagtggggattcattaggtcattgaataagttaacccccctaaatt |
36935772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 36956367 - 36956542
Alignment:
| Q |
2 |
ttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatatgtgcttcttttccttctatcaccatcaactagcaac |
101 |
Q |
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| T |
36956367 |
ttggttggcaaatgtgtttctggttatggctctgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaactagcaag |
36956466 |
T |
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| Q |
102 |
cccttgtggtacatttctcattatccatatcnnnnnnnggcatcacgaactgaaagtaaacctgatcaaggtgtta |
177 |
Q |
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| T |
36956467 |
ccattgcggtacatttctcactacccttttcttttcttggcatcacaaactgaaagtaaacctgatcaagatgtta |
36956542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 36948291 - 36948407
Alignment:
| Q |
2 |
ttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatatgtgcttcttttccttctatcaccatcaactagcaac |
101 |
Q |
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| T |
36948291 |
ttggttggcaaatgtgtttctggttatgacattgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcata |
36948390 |
T |
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| Q |
102 |
cccttgtggtacatttc |
118 |
Q |
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| T |
36948391 |
ccattgcggtacatttc |
36948407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 12493457 - 12493290
Alignment:
| Q |
2 |
ttggttgtccaatgtgtttctggttatggcactgatttttgtcgcggttgtgattttgttatatgtgcttcttttccttctatcaccatcaactagcaac |
101 |
Q |
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| T |
12493457 |
ttggttgtcaaatgtgtctctggttatggcattgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaactagcaag |
12493358 |
T |
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| Q |
102 |
cccttgtggtacatttctcattatccatatcnnnnnnnggcatcacgaactgaaagtaaacctgatca |
169 |
Q |
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| T |
12493357 |
ccattgcggtacatttctcactacctttatctttttttggcatcacgaactgaaagtaaacatgatca |
12493290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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