View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_23 (Length: 344)
Name: NF2566_low_23
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 11225387 - 11225703
Alignment:
| Q |
17 |
aagctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgta |
116 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11225387 |
aagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgtaagtatacttttgggtgtgttggttgattaaatgttgtgcatgta |
11225486 |
T |
|
| Q |
117 |
gtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaattatgcgaactgattgcttgatgtatttctgattgtaagttgatt |
216 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11225487 |
gtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatgcgaactgattgtttgatgtatttctgattgtaagttgatt |
11225586 |
T |
|
| Q |
217 |
gtttaactgctcattctacaaactgattgtaaatgaatgagttgtatgtagaattttgtttaacaatcagttatggttttttgaaactcattctgctcat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
11225587 |
gtttaactgctcattctacaaactgattgtaaat-aatgagttgtatgtagaattttgtttaacaatcagttatggtttttttaaac-------gctcat |
11225678 |
T |
|
| Q |
317 |
tatgttcaacatatataaaaggaaa |
341 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
11225679 |
tatgtttaacatatataaaaggaaa |
11225703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 11225206 - 11225401
Alignment:
| Q |
27 |
tttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgt |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||| || |||||| |
|
|
| T |
11225206 |
tttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatatacttttgggtgtgttgattgattaaatgttatgcatgtactataagtgt |
11225305 |
T |
|
| Q |
127 |
tacacattgttgacaaaattctgagaattgattgtaaaatcaaaattatgcgaactgattgcttgatgtatttctgattgtaagttgattgtttaa |
222 |
Q |
| |
|
| ||||||||||| ||||||||| || ||||||||||||||||||| || |||||||||| || |||| | |||| |||||| ||||| ||||| |
|
|
| T |
11225306 |
tgcacattgttgataaaattctggaaactgattgtaaaatcaaaattttgtgaactgattgtttaatgtgtacctgaatgtaagctgattatttaa |
11225401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 11224891 - 11225048
Alignment:
| Q |
64 |
atagctgtaattatacttttgggtgtgttg-gttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgta |
162 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| || |||||| ||| ||||| | |
|
|
| T |
11224891 |
atagttgtaagtatacttttgggtgtgttaagttgattaaatgttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgattaca |
11224989 |
T |
|
| Q |
163 |
aaatcaaaattatgcgaactgattgcttgatgtatttctgattgtaagttgattgtttaa |
222 |
Q |
| |
|
||||||||||| || || |||||| || |||| | ||||||||||| ||||||||||| |
|
|
| T |
11224990 |
aaatcaaaattctg-aaattgattgtttaatgtttacctgattgtaagctgattgtttaa |
11225048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 11225034 - 11225156
Alignment:
| Q |
17 |
aagctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgta |
116 |
Q |
| |
|
||||||||| |||||||||||| |||| |||||| | ||||||||| || | ||||| |||||||| || |||||||||||||| ||||||| |||||| |
|
|
| T |
11225034 |
aagctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgttggttgattatatgttgttcatgta |
11225133 |
T |
|
| Q |
117 |
gtacaagtgttacacattgttga |
139 |
Q |
| |
|
||| ||| ||||||||||||||| |
|
|
| T |
11225134 |
gtataagagttacacattgttga |
11225156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 337
Target Start/End: Original strand, 3072165 - 3072298
Alignment:
| Q |
204 |
ttgtaagttgattgtttaactgctcattctacaaactgattgtaaatgaatgagttgtatgtagaattttgtttaacaatcagttatggttttttgaaac |
303 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| |||| ||||| | | ||||||||||||||||||| |||||| || |||| || | |
|
|
| T |
3072165 |
ttgtaagttgattgtttaactgcacattctacaaattgattgcaaataaatgaacaatttatagaattttgtttaacaattagttatagtctttttaatc |
3072264 |
T |
|
| Q |
304 |
tcattctgctcattatgttcaacatatataaaag |
337 |
Q |
| |
|
||||| ||| |||| | || |||||||||||||| |
|
|
| T |
3072265 |
tcattttgcccattctttttaacatatataaaag |
3072298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University