View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_25 (Length: 340)
Name: NF2566_low_25
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_25 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 3376561 - 3376892
Alignment:
| Q |
9 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3376561 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
3376660 |
T |
|
| Q |
109 |
ggttttgttccatattcgactttgctcaaagcagacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3376661 |
ggttttgttccatattcgactttgctcaaagcaaacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
3376760 |
T |
|
| Q |
209 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3376761 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
3376860 |
T |
|
| Q |
309 |
accttgtgaggacatcatcaacacatgggaac |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3376861 |
accttgtgaggacatcatcaacacatgggaac |
3376892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University