View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_27 (Length: 320)
Name: NF2566_low_27
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 31 - 313
Target Start/End: Original strand, 48399248 - 48399525
Alignment:
| Q |
31 |
aaataggtacgagtttggtttatctatttcaataaaattatccttattatataaacccatttgtttaagttaaaatgattacgataagaacttaatagct |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48399248 |
aaataggtacgagtttggtttatctatttcaataaaattatcct-attatataaacccatttgtttaagttaaaatgattacgataagaacttaatagct |
48399346 |
T |
|
| Q |
131 |
ttaatacaacaacttctttcaacagcttgaatccaaaatgtgatagtgatgtttgtgtccaacagcacctaacacgtttgacacgacaccacaaatgtcc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48399347 |
ttaatacaacaacttctttcaacagcttgaatccaaaatgtgatagtgctgtttgtgtccaacagcacctaacacgtttgacacgacaccacaaatgtcc |
48399446 |
T |
|
| Q |
231 |
cactttggtttaatcacaagttttacattttagcgcttgtttttgtcctatgtatgtatgtaaaacttgacgaagaattatat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48399447 |
cactttggtttaatcacaagttttacattttagcgcttgtttttgtcc----tatgtatgtaaaacttgacgaagaattatat |
48399525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University