View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_32 (Length: 297)
Name: NF2566_low_32
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 293483 - 293221
Alignment:
| Q |
18 |
cacacttcattctgatctcacatgatagtgaaaaacttaaggtttgtaagtttattctatattctcaaaacatttctaacttggcttatcctagttattc |
117 |
Q |
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| T |
293483 |
cacacttcattctgatctcacatgatagtgaaaaacttaaggtttgtaagtttattctatattctcaaaacatttctaacttggcttatcctagttattc |
293384 |
T |
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| Q |
118 |
tatctgattctttattatctgttgcttttctcttaagaattagaacaaagacaaaacaggttgaataggatgagcgatttaaacagtgaaagatcaaaga |
217 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293383 |
tatctgattctttattatctgttgcttttccctttagaattagaacaaagacaaaacaggttgaataggatgagcgatttaaacagtgaaagatcaaaga |
293284 |
T |
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| Q |
218 |
tgtggaacgtatacacggcttcaaacgcaggtccgtcacattcacagacaggaggaggaggag |
280 |
Q |
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| T |
293283 |
tgtggaacgtatacacggcttcaaacgcaggtccgtcacattcacagacaggaggaggaggag |
293221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 46244501 - 46244548
Alignment:
| Q |
137 |
tgttgcttttctcttaagaattagaacaaagacaaaacaggttgaata |
184 |
Q |
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|||| |||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
46244501 |
tgttccttttctctttagaattagaaccaagacaaaacaggttgaata |
46244548 |
T |
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