View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_33 (Length: 292)
Name: NF2566_low_33
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 5279265 - 5279001
Alignment:
| Q |
6 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttcattcnnnnnnnnnnnnnnnnnnnnctgcttc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5279265 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttcattcatttttattttccattttttctgcttc |
5279166 |
T |
|
| Q |
106 |
tgtgttttagtactatt-ggttgcctcataatttttggctggtcataattaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaa |
204 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5279165 |
tgttttttagtactatttggttgcctcataatttttggctggtcataattaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaa |
5279066 |
T |
|
| Q |
205 |
ctcttcattctctaagctggtagctgaatattggtctagctgcaggaatagttccttcccaaaca |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||||||| |
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| T |
5279065 |
ctcttcattctctaagctggtagctgaatattggtctagttgcaggaagaattcccttccaaaca |
5279001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 5316832 - 5317079
Alignment:
| Q |
8 |
ttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttcattcnnnnnnnnnnnnnnnnnnnnctgcttctg |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5316832 |
ttccaactgtaatagatagtgacatggtcatggtcttatcttatggtatgcttaatccttattcttcattcttttttattttccattttttctgcttctg |
5316931 |
T |
|
| Q |
108 |
tgttttagtactattggttgcctcataatttttggctggtcataattaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
5316932 |
tgttttagtactattggttgcctcataatttttggctggtcataattaaagggaaagtgatggaatatgatgagccttcaaagctaatggacacaaactc |
5317031 |
T |
|
| Q |
208 |
ttcattctctaagctggtagctgaatattggtctagctgcaggaatag |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5317032 |
ttcattctctaagctggtagctgaatattggtctagctgcaggaatag |
5317079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 5286903 - 5286770
Alignment:
| Q |
125 |
ttgcctcataatttttggctggtcataattaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctgg |
224 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
5286903 |
ttgcctcataattttttgctggt--ttattaaagggaaacttgtggaatatgatgagccttcaaagctaatggatacaaactcatcattctctaagctgg |
5286806 |
T |
|
| Q |
225 |
tagctgaatattggtctagctgcaggaatagttcct |
260 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |
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|
| T |
5286805 |
tagctgaatattggtctagttgcaggaagagttcct |
5286770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 5310271 - 5310406
Alignment:
| Q |
125 |
ttgcctcataatttttggctggtcataattaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctgg |
224 |
Q |
| |
|
||||||| |||||||| ||||| || |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5310271 |
ttgcctcgtaatttttttctggttattattatagggaaacttgtggaatatgatgagccttcaaagctaatgaacacaaactcttcattctctaagttgg |
5310370 |
T |
|
| Q |
225 |
tagctgaatattggtctagctgcaggaatagttcct |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
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|
| T |
5310371 |
tagctgaatattggtctagctgcaggaagagttcct |
5310406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 152 - 267
Target Start/End: Complemental strand, 14946146 - 14946031
Alignment:
| Q |
152 |
attaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagctgcagga |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14946146 |
attaaagggaaactggtggaatatgatgaaccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtccagctgcagga |
14946047 |
T |
|
| Q |
252 |
atagttccttcccaaa |
267 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
14946046 |
agagttccttcccaaa |
14946031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 15128937 - 15129036
Alignment:
| Q |
153 |
ttaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagctgcaggaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15128937 |
ttaaagggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaa |
15129036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 5299420 - 5299539
Alignment:
| Q |
157 |
agggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagct-----ggtagctgaatattggtctagctgcagga |
251 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |
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| T |
5299420 |
agggaaacttgtggaatatgatgagccttcaaagctaatgaacacaaactcttcagtctctaagttaagttggtagctgaatattggtctagctgcagga |
5299519 |
T |
|
| Q |
252 |
atagttccttcccaaacaat |
271 |
Q |
| |
|
| ||||||||||||||||| |
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|
| T |
5299520 |
agggttccttcccaaacaat |
5299539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 14946266 - 14946202
Alignment:
| Q |
6 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttatt |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||| | | |||||||| |
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|
| T |
14946266 |
agttccaactgtaatagacagtgacatggtcatggtcctatcttatggtatgttaattccttatt |
14946202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 15128814 - 15128882
Alignment:
| Q |
6 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttc |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| | | |||||||||||| |
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|
| T |
15128814 |
agttccaactgtaatagacagtgacatggtcatggttctatcttatggtatgttaattccttattcttc |
15128882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 5286992 - 5286941
Alignment:
| Q |
6 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatg |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5286992 |
agttccaactgtaatagacagtgacatggtcatggtcctatcttatggtatg |
5286941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 5310182 - 5310250
Alignment:
| Q |
6 |
agttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattcttc |
74 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||||||||||||| | |||||||||||| |
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|
| T |
5310182 |
agttccaactgtcatagacagtgacatggtcatggtcctatcttatggtatgttatttccttattcttc |
5310250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 5346549 - 5346457
Alignment:
| Q |
161 |
aaactggtggaatatgatgagccttcaaagctaatggac-acaaac--tcttcattctctaagctggtagctgaatattggtctagctgcagg |
250 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||| |||| ||||||||||| ||||| ||||||||||| ||||| ||||||||| |
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|
| T |
5346549 |
aaactggttgaatatgatgaaccttcaaaactgatggaggacaattcttcttcattctccaagcttgtagctgaatactggtccagctgcagg |
5346457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 154 - 269
Target Start/End: Complemental strand, 31523164 - 31523049
Alignment:
| Q |
154 |
taaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagctgcaggaat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| || ||| |
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| T |
31523164 |
taaagggaaactggtggaatatgatgagccttcaaagctaatggaaaccaactcttcattctctaagctggtagctgagtattggtctagctacaagaag |
31523065 |
T |
|
| Q |
254 |
agttccttcccaaaca |
269 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
31523064 |
agttccatcccaaaca |
31523049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 31523432 - 31523367
Alignment:
| Q |
8 |
ttccaactgtaatagacagtgacatggttctggtcttatcttatggtatgcttaatccttattctt |
73 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||||| | | ||||||||||| |
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|
| T |
31523432 |
ttccaactgtaatagacagtgacatggtcatgatcctatcttatggtatgttgattccttattctt |
31523367 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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