View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_35 (Length: 278)
Name: NF2566_low_35
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 7714486 - 7714234
Alignment:
| Q |
9 |
agcagagagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaacacggaaga |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
7714486 |
agcagggagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaaga |
7714387 |
T |
|
| Q |
109 |
cctgaggcgacaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaatggttcag |
208 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7714386 |
cctgaggtgacaagtgatgaccaatcacaagaaagctaaaaaggtttgcatcttcttctcatcatccaaccaacttctcttttctttcaaaatggttcag |
7714287 |
T |
|
| Q |
209 |
aaaattaaggaactaagtaagagaattgaggaccttaatgctaataagagaag |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7714286 |
aaaattaaggaactaagtaagagaattgaggaccttaatgctaataagagaag |
7714234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 7527767 - 7528008
Alignment:
| Q |
18 |
ccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaacacggaagacctgaggcg |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
7527767 |
ccaacaaccatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcg |
7527866 |
T |
|
| Q |
118 |
acaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaatggttcagaaaattaag |
217 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
7527867 |
acaagtgatgaccaatcacaagaaagctaaaaaggtccgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaag |
7527966 |
T |
|
| Q |
218 |
gaactaagtaagagaattgaggaccttaatgctaataagaga |
259 |
Q |
| |
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||||| |||||||||||||||| |||||||| | |||||||| |
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|
| T |
7527967 |
gaacttagtaagagaattgaggcccttaatgttgataagaga |
7528008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 7129506 - 7129261
Alignment:
| Q |
2 |
gaggaggagcagagagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaaca |
101 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||| |
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| T |
7129506 |
gaggagcagcagggagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaaca |
7129407 |
T |
|
| Q |
102 |
cggaagacctgaggcgacaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaat |
201 |
Q |
| |
|
| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
7129406 |
ccgaagacttgaggcgacaagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaat |
7129307 |
T |
|
| Q |
202 |
ggttcagaaaattaaggaactaagtaagagaattgaggaccttaat |
247 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
7129306 |
ggttcagaaaattaaggaacttagtaagagaattgaggcccttaat |
7129261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 7722780 - 7722521
Alignment:
| Q |
2 |
gaggaggagcagagagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaaca |
101 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||| |||| |
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| T |
7722780 |
gaggagcagcagggaaccaacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaaca |
7722681 |
T |
|
| Q |
102 |
cggaagacctgaggcgacaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaat |
201 |
Q |
| |
|
| |||||| |||||||||||||||||| || | ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
7722680 |
ctgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttttgcatcttcttctcatcatccaaccaacttctcttttcatacaaaat |
7722581 |
T |
|
| Q |
202 |
ggttcagaaaattaaggaactaagtaagagaattgaggaccttaatgctaataagagaag |
261 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
7722580 |
ggttcagaaaattaaggaacttagtaagagaattgaggcccttaatattgataagagaag |
7722521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 7481632 - 7481878
Alignment:
| Q |
2 |
gaggaggagcagagagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaaca |
101 |
Q |
| |
|
|||||| ||||| || ||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
7481632 |
gaggagcagcagggaaccaacaaccatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaaca |
7481731 |
T |
|
| Q |
102 |
cggaagacctgaggcgacaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaat |
201 |
Q |
| |
|
| |||||| ||||||||||||| |||| || | ||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
7481732 |
ctgaagacttgaggcgacaagtcatgaccagtaacaagaaggctaaaaagttttacatcttcttctcatcatccaaccagcttctcttttcttacaaaat |
7481831 |
T |
|
| Q |
202 |
ggttcagaaaattaaggaactaagtaagagaattgaggaccttaatg |
248 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
7481832 |
ggttcagaaaattaaggaacttagtaagagaattgaggctcttaatg |
7481878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 7494050 - 7494280
Alignment:
| Q |
18 |
ccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaacacggaagacctgaggcg |
117 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |
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|
| T |
7494050 |
ccaacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcg |
7494149 |
T |
|
| Q |
118 |
acaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaatggttcagaaaattaag |
217 |
Q |
| |
|
||| ||||||| || | ||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7494150 |
acaggtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaag |
7494249 |
T |
|
| Q |
218 |
gaactaagtaagagaattgaggaccttaatg |
248 |
Q |
| |
|
||||| |||||||||||||||| |||||||| |
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|
| T |
7494250 |
gaacttagtaagagaattgaggcccttaatg |
7494280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 7519717 - 7519947
Alignment:
| Q |
18 |
ccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaacacggaagacctgaggcg |
117 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||| || |||||||||||||||||||||||| ||||||| ||| |||||||||| |||||| ||||||| |
|
|
| T |
7519717 |
ccaacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcg |
7519816 |
T |
|
| Q |
118 |
acaagtgatgagcaatcacaagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaatggttcagaaaattaag |
217 |
Q |
| |
|
||||||||||| | | ||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7519817 |
acaagtgatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagataattaag |
7519916 |
T |
|
| Q |
218 |
gaactaagtaagagaattgaggaccttaatg |
248 |
Q |
| |
|
||||| |||||||||||||||| |||||||| |
|
|
| T |
7519917 |
gaacttagtaagagaattgaggcccttaatg |
7519947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 55 - 248
Target Start/End: Original strand, 7506351 - 7506544
Alignment:
| Q |
55 |
caaagatgctcttgatgatgccgatgacttgctcgattacttcaacacggaagacctgaggcgacaagtgatgagcaatcacaagaaagctaaaaaggtt |
154 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| || | ||||||| ||||||||| || |
|
|
| T |
7506351 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
7506450 |
T |
|
| Q |
155 |
cgcatcttcttctcatcatccaaccaacttctcttttcttttaaaatggttcagaaaattaaggaactaagtaagagaattgaggaccttaatg |
248 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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|
| T |
7506451 |
cacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatg |
7506544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 239
Target Start/End: Complemental strand, 16750769 - 16750566
Alignment:
| Q |
36 |
aactatggctggaaaatctcaaagatgctcttgatgatgccgatgacttgctcgattacttcaacacggaagacctgaggcgacaagtgatgagcaatca |
135 |
Q |
| |
|
|||||||| |||| || ||||||||| ||||||||||||| ||||||||||| ||| | | || |||||| || ||| ||||| ||| || | |
|
|
| T |
16750769 |
aactatgggtggagaagctcaaagatactcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaaga |
16750670 |
T |
|
| Q |
136 |
caagaaagctaaaaaggttcgcatcttcttctcatcatccaaccaacttctcttttcttttaaaatggttcagaaaattaaggaactaagtaagagaatt |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || || |||||||| ||||||||||| ||||| |||| ||||||||||||| |||| || ||| ||||| |
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|
| T |
16750669 |
caagaaggctaaaaaggttcgcatcttcttatcctcttccaaccagcttctcttttcgtttaacatggctcagaaaattaagaaacttaggaagcgaatt |
16750570 |
T |
|
| Q |
236 |
gagg |
239 |
Q |
| |
|
|||| |
|
|
| T |
16750569 |
gagg |
16750566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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