View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_36 (Length: 276)
Name: NF2566_low_36
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 25166735 - 25167002
Alignment:
| Q |
1 |
aacacaatcagatcgaccaagtcactcatagtaagtgataatcttttgtattgcatggaaaatgtttctgatttaaaaatgttctcatgatgcacatatc |
100 |
Q |
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| T |
25166735 |
aacacaatcagatcgaccaagtcactcatagtaattgataatcttttgtattgcatggaaaatgtttctgatttaaaaatgttctcatgatgcacatatc |
25166834 |
T |
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| Q |
101 |
catttcattcaaaaatat----gcccaacagtttaacaaatatcaaaaatcatatttgaagaagaaataaattccagattgaattatttatcaagtcatt |
196 |
Q |
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| T |
25166835 |
catttcactcaaaaatatatatgcccaacagtttaacaaatatcaaaaatcatatttaaagaagaaataaattccagattgaattatttatcaagtcatt |
25166934 |
T |
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| Q |
197 |
tatttgtgagaatggttggaaaataattcaaaagaacattctcagtatcccgaaacatgaagattctg |
264 |
Q |
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| T |
25166935 |
tatttgtgagaatggttggaaaataattcaaaagaacattctcagtatcccgaaacatgaagattctg |
25167002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 25254436 - 25254378
Alignment:
| Q |
138 |
atcaaaaatcatatttgaagaagaaataaattccagattgaattatttatcaagtcatttat |
199 |
Q |
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| T |
25254436 |
atcaaaaatcatatttgaagaat---taaattccagattgaattatttatcaagtaatttat |
25254378 |
T |
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