View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_38 (Length: 268)
Name: NF2566_low_38
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 20529049 - 20528800
Alignment:
| Q |
1 |
aggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatggctctggtgctgaaac |
100 |
Q |
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| T |
20529049 |
aggtgtgggaagatgttaaagaaacttgtgcaacagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatagctctggtgctgaaac |
20528950 |
T |
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| Q |
101 |
cttgaatgcggctactgttgtcatgcaaccagcatctgttagcattgctgcctctgttacaccagctgctgttctatctgctatacaaccagcaattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20528949 |
cttgaatgcggctactgttgtcatgcaaccagcatctgttagcgttgatgcctctattacaccagctgctgttctgtctgctatacaaccagcaattgtt |
20528850 |
T |
|
| Q |
201 |
agcgctgttgcctcagctacaccagttgttgtcccgtctgctatataacc |
250 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20528849 |
agcgctgctgcctctgctacaccagttgttgtcccgtctgctatataacc |
20528800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 12371502 - 12371361
Alignment:
| Q |
1 |
aggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatggctctggtgctgaaac |
100 |
Q |
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|||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
12371502 |
aggtgtgggaagatgttacggaaacttgtgcaacagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatagctccggtgctgaaaa |
12371403 |
T |
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| Q |
101 |
cttgaatgcggctactgttgtcatgcaaccagcatctgttag |
142 |
Q |
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| T |
12371402 |
catgaatgtggctaatgctgtcatgcaaccagcagctgttag |
12371361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 26682502 - 26682668
Alignment:
| Q |
1 |
aggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttgtgaatggctctggtgctgaaac |
100 |
Q |
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|||||| ||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
26682502 |
aggtgtaggaagatgttatggaaacttgcgcaacagtggttgaaagagtctggtctttggttgaagattggcaacttgcgaatagctccagtgctgaaaa |
26682601 |
T |
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| Q |
101 |
cttgaatgcggctactgttgtcatgcaaccagcatctgttagcattgctgcctctgttacaccagct |
167 |
Q |
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||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||||| |
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| T |
26682602 |
cttgaatgcggctactgctgtcatgcaaccagcagttgttagtgctgctatatctgttacaccagct |
26682668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2974228 - 2974151
Alignment:
| Q |
1 |
aggtgtgggaagatgttaaagaaacttgtacaatagtggttgaaagagctcggtctttggttgaagattggcaacttg |
78 |
Q |
| |
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||||||||||||| || | |||||||||| |||||||||| |||||||| ||||| ||| |||| || ||||| |||| |
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| T |
2974228 |
aggtgtgggaagacgtcacagaaacttgtgcaatagtggtggaaagagcgcggtccttgattgacgactggcatcttg |
2974151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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