View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_4 (Length: 659)
Name: NF2566_low_4
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 42 - 649
Target Start/End: Original strand, 28014042 - 28014649
Alignment:
| Q |
42 |
attagtccatattttagttccaaaaatataaatgtttgctctccttgatgttatcagtatcatttatcttagacaattactcgatctggtgtggcaggaa |
141 |
Q |
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| T |
28014042 |
attagtccatattttagttccaaaaatataaatgtttgctctccttgatgttatcggtatcatttatcttagacaattactcgatctggtgtggcaggaa |
28014141 |
T |
|
| Q |
142 |
aaaattctacgatatccggagactggttattaaccagactgtcacacctaatcaagctgttttgcattgaaaaatttctcctggcatgagtaaaagtgac |
241 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28014142 |
aaaattccacgatatccggagactggttattaaccagactgtcacacctaatcaagctgttttgcattgaaaaatttctcctggcataagtaaaagtgac |
28014241 |
T |
|
| Q |
242 |
aaattgtatgttgtagatcgttgcaattgcaaatagcaaagatcttactatcaagtttacct-gtgaaattttttggcaatttatgcagcatatgtcagt |
340 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||| |
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| T |
28014242 |
aaattgtgtgttgtagatcgttgcaattgcaaatagcaaagatcttacaatcaagttaaccttgtgaaatttt-tggcaatttatgcagcatatgtcagt |
28014340 |
T |
|
| Q |
341 |
tctaagttgttgctctttatgtctcgtaactaaagttattgattcatctgccaatacatgtccgtgtataaaattgcttgcattcgcatttttaaaatta |
440 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28014341 |
tctaagttgttgctctttatgtcttgtaactaaagttattgattcatctgccaatacatgtccgtgtataaaattgcttgcattcgcattttttaaatta |
28014440 |
T |
|
| Q |
441 |
catttgaatgtgcaagaaaataacatgaagaaagaacgtaaagttgttgacttattgtttcacaactggaggatttaatttcaaaattacacatactaac |
540 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28014441 |
catttgaatgtgcaagaaaataacatcaagaaagaccgtaaagctgttgacttattgtttcacaactgaaggatttaatttcaaaattacacatactaac |
28014540 |
T |
|
| Q |
541 |
caatattcatttgcattttaactaaaagtttgcaaaccccgattcaaaagaatctcactctcatctaaggattcactcaccnnnnnnnccttctaatttc |
640 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28014541 |
caatattcatttgcattttaactgaaagtttgcacaccccgattcaaaagaatctcactctcatctaaggattcactcacctttttttccttctaatttc |
28014640 |
T |
|
| Q |
641 |
ctagtataa |
649 |
Q |
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||||||||| |
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| T |
28014641 |
ctagtataa |
28014649 |
T |
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