View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_41 (Length: 250)
Name: NF2566_low_41
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 47242654 - 47242432
Alignment:
| Q |
17 |
tttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47242654 |
tttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggc |
47242555 |
T |
|
| Q |
117 |
aaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47242554 |
aaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatatctaaagccttgttgaaatgaagttaattggactaattctgtt |
47242455 |
T |
|
| Q |
217 |
tatttgcacttgctgtgattcat |
239 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
47242454 |
tattttcacttgctgtgattcat |
47242432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 47249041 - 47248893
Alignment:
| Q |
75 |
atggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatat |
174 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||||||||||||||| || |||||||| |||||| |||||| ||| |||||| |||||||| |
|
|
| T |
47249041 |
atggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacatttattactgtaaagttgaatat |
47248942 |
T |
|
| Q |
175 |
ctaaagccttgttgaaatgaagttaattggactaattatgtttatttgca |
224 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||| | |||||||| |||| |
|
|
| T |
47248941 |
ataaatccttgctgaaatgaa-ataattggactgaccatgtttatgtgca |
47248893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 47253871 - 47253696
Alignment:
| Q |
63 |
taggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgt |
162 |
Q |
| |
|
|||||| | |||||||||||||| || || || | |||| |||||||||||||||||| |||| | ||| ||||| |||||| || || |||||| |
|
|
| T |
47253871 |
taggttattaagatggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgt |
47253772 |
T |
|
| Q |
163 |
aaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattca |
238 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||| |||| || ||||| |||| |
|
|
| T |
47253771 |
taatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttca |
47253696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University