View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_5 (Length: 644)
Name: NF2566_low_5
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Original strand, 41264759 - 41265358
Alignment:
| Q |
18 |
acaataatcaacaacttggtcatatatacatgtgcaaattagttttgcacagtcactactatctttccaagaatttctctaacaattgacatgtgagacc |
117 |
Q |
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| T |
41264759 |
acaataatcaacaacttggtcatatatacatgtgcaaattagttttgcactgtcactactatctttccaagaatttctctaacaattgacatgtgagacc |
41264858 |
T |
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| Q |
118 |
acgttgatgattagtgatgtagacatnnnnnnn-tatttataacttcataaatttgacatgaaagaggttgaatggaaggtagaaaatggcctttatata |
216 |
Q |
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| T |
41264859 |
acgttgatgattagtgatgtagacataaaaaaaatatttataacttcataaatttgacatgaaagaggttgaatggaaggtagaaaatggcctttatata |
41264958 |
T |
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| Q |
217 |
cactttcttctttctccgtgtcttcctcatttcttcttttgggatattgtaacactaatcattgttccatatattgttacgccaagaagcaattgattaa |
316 |
Q |
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| T |
41264959 |
cactttcttctttctccgtgtcttcctcacttcttcttttgggatattgtaacactaatcattgttccatatattgttacgccaagaagcaattgattaa |
41265058 |
T |
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| Q |
317 |
agcttaaacatgtttggattaacaacgagtttgatgaaattgtgacgacactacaaaattactaagacgatgattttgttctgatctatcataatttcgt |
416 |
Q |
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| T |
41265059 |
agcttaaacgtgtttggattaacaacgagtttgatgaaattgtgacgacactataaaattattaagacgatgattttgttgtgatctatcataatttcgt |
41265158 |
T |
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| Q |
417 |
caaattcactcttgattcaaatccacgtgtataatttactgaatatggtggagtgtaaaataatcacctaaccnnnnnnnncccactcaataattaccca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41265159 |
caaattcactcttgattcaaatccacgtgtataatttactgaatatggtggagtgtaaaataatcacctaaccttttttttcccactcaataattaccca |
41265258 |
T |
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| Q |
517 |
accttttgnnnnnnnncacaagaataaccacctaacctaaaaaagtattttcctggagtatgttatagcaatatgctagtacggtatcagtactgtgtcc |
616 |
Q |
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| T |
41265259 |
accttttgttttttttcacaagaataaccacctaacctaaaaaagtattttcctggagtatgttatagcaatatgctagtacggtattagtaccgtgtcc |
41265358 |
T |
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