View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2566_low_55 (Length: 235)
Name: NF2566_low_55
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39225134 - 39225359
Alignment:
| Q |
1 |
gtagcaccaccccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctgtaacataacataattcagaatcagtttacataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39225134 |
gtagcaccaccccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctgtaacataacataattcagaatcagtttacataat |
39225233 |
T |
|
| Q |
101 |
tgcttcctttcacaatttaaactataatatctatatgcttttggttattgtgcatatgttagctactagagatatgatatatattagtgggt----tata |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39225234 |
tgcttcctttcacaatttaaactataatatctatatgcttttggttattgtgcatatgttagctactagagatatgatatatattagtgggttatatata |
39225333 |
T |
|
| Q |
197 |
gtcagaaaaagatggttgtgatttgt |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39225334 |
gtcagaaaaagatggttgtgatttgt |
39225359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 4979833 - 4979782
Alignment:
| Q |
15 |
aagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctg |
66 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| || ||||| |||| |
|
|
| T |
4979833 |
aagctgtatacatcgcttttctcatcaactttcaatgtataggcatactctg |
4979782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 16737089 - 16737026
Alignment:
| Q |
3 |
agcaccaccccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctg |
66 |
Q |
| |
|
||||| || ||||| || || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16737089 |
agcacaactccaaaactatacacatcacttttctcatcaactttcaatgtgtatgcatattctg |
16737026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 17825004 - 17825063
Alignment:
| Q |
9 |
accccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctgta |
68 |
Q |
| |
|
|||||||| || || ||||||| |||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
17825004 |
accccaaaactatacacatcacatttctcattcacttgcattgtgtatgcatattctgta |
17825063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 26736808 - 26736743
Alignment:
| Q |
2 |
tagcaccaccccaaagctgtatacatcacttttctcatccactttcaatgtgtatgcatattctgt |
67 |
Q |
| |
|
||||||||| || || || || ||||||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
26736808 |
tagcaccactccgaaactatacacatcacttttttcatccactttgagagtgtatgcatattctgt |
26736743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University