View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_57 (Length: 227)
Name: NF2566_low_57
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_57 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 34290331 - 34290551
Alignment:
| Q |
7 |
aatgttaatgcattattagtctagcatgttagtgctaaatatggtttttcagaaatttaccaacaactcctattctcttctttggcttccatcactgctg |
106 |
Q |
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| T |
34290331 |
aatgttaatgcattattagtctagcatgttagtgctaaatatggtttttcagaaatttaccaacaactcctattctcttctttggcttccatcattgctg |
34290430 |
T |
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| Q |
107 |
attctgctaagtagtgcttcagtcaatggtgttgaacaaaaggtaatccatcaatttaatttctttcaaatttgagctatctcccaatatgctatttttt |
206 |
Q |
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| T |
34290431 |
attctgctaagtagtgcttcagtcaatggtgttgaacaaaaggtaatccatcaatttaatttctttcaaatttgagctatctcccaatatgctatttttt |
34290530 |
T |
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| Q |
207 |
gtgttttattctttattaact |
227 |
Q |
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| T |
34290531 |
gtgttttattctttattaact |
34290551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 12730192 - 12730097
Alignment:
| Q |
51 |
tttttcagaaatttaccaacaactcctattctcttctttggcttccatcactgctgattctgctaagtagtgcttcagtcaatggtgttgaacaaaagg |
149 |
Q |
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| T |
12730192 |
tttttcagaaacttaccaac---tcctattctcttgtttggcttccattactgcttattctcctaaataaagtttcagttaatggtgttgaacaaaagg |
12730097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 12730054 - 12729987
Alignment:
| Q |
156 |
atcaatttaatttctttcaaatttgagctatctcccaatatgctattttttgtgttttattctttattaact |
227 |
Q |
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|||| ||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||||||||| |
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| T |
12730054 |
atcagtttaatttctttcaaatttgagcaatctcctaacatg----tttttgtgttttattctttattaact |
12729987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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