View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_6 (Length: 622)
Name: NF2566_low_6
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 2486819 - 2486401
Alignment:
| Q |
16 |
atgaacaggggaagttttgaattagcttcaaggaatcagtagaaacataaaagcttatcaatccctgattataaactaccaaattcagactaaccggctg |
115 |
Q |
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| T |
2486819 |
atgaacaggggaagttttgaattagcttcaaggaatcagtagaaacataaaagcttatcaatccctcattataaactaccaaattcagactaaccggctg |
2486720 |
T |
|
| Q |
116 |
gtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagcacttgtaagcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486719 |
gtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagcacttgtaagcaa |
2486620 |
T |
|
| Q |
216 |
cacgcgtgtctgctcactgtcatgataaatacaatgagaaagatcttatcagaaccaatattgaatcgtgttaataaaatcaattagagattaaacatta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2486619 |
cacgcgtgtctgctcactgtcatgataaatacaatgagaaagatcttatcagaaccaatattgaatcgtgttaataaaatcaattagagatcaaacatta |
2486520 |
T |
|
| Q |
316 |
tgatttgctagttgtcattattatttgctagatcaaaatacagacactgtaggcgacaccatatgtgtttatttatctccatctttttcttacattttat |
415 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2486519 |
tgatttgctagtcgtcattattatttgctagatcaaaatacagacacggtaggcgacacca-atgtgtttatttatctccatctttttcttacattttat |
2486421 |
T |
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| Q |
416 |
ctttacaagtctacacattt |
435 |
Q |
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| T |
2486420 |
ccttacaagtctacacattt |
2486401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 496 - 607
Target Start/End: Complemental strand, 2486340 - 2486229
Alignment:
| Q |
496 |
tatatggtttcctttatacgaataataatatgaatacaaatgtatgtcatacagcaaccatgtaattaagaaaacagtcaatgagaatgagatctttatt |
595 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486340 |
tatatggtttgctttatacgaataataatatgaatacaaatgtatgtcatacagcaaccatgtaattaagaaaacagtcaatgagaatgagatctttatt |
2486241 |
T |
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| Q |
596 |
aatatggttatt |
607 |
Q |
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|||||||||||| |
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| T |
2486240 |
aatatggttatt |
2486229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 41594824 - 41594955
Alignment:
| Q |
104 |
actaaccggctggtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagc |
203 |
Q |
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||||||| || || || ||||| |||||||| | ||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
41594824 |
actaaccagcagggccagagagaagaatagttctgctagcaggagcaagattacgcgtatatttagaaacttcagcatgctttaaatgaacatatgcagc |
41594923 |
T |
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| Q |
204 |
acttgtaagcaacacgcgtgtctgctcactgt |
235 |
Q |
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|||||||||||| || || ||||||||||||| |
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| T |
41594924 |
acttgtaagcaaaacccgcgtctgctcactgt |
41594955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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