View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2566_low_60 (Length: 204)

Name: NF2566_low_60
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2566_low_60
NF2566_low_60
[»] chr7 (4 HSPs)
chr7 (6-188)||(8802326-8802514)
chr7 (6-154)||(11776201-11776349)
chr7 (6-99)||(21416278-21416371)
chr7 (129-188)||(8802622-8802681)
[»] chr3 (12 HSPs)
chr3 (6-190)||(17732041-17732230)
chr3 (6-190)||(19033272-19033461)
chr3 (8-188)||(40195959-40196147)
chr3 (6-184)||(16869649-16869829)
chr3 (7-99)||(54017686-54017779)
chr3 (6-129)||(43978712-43978837)
chr3 (8-99)||(16143366-16143457)
chr3 (7-91)||(32200975-32201059)
chr3 (118-167)||(23162308-23162358)
chr3 (34-99)||(32201251-32201317)
chr3 (123-188)||(17731875-17731940)
chr3 (123-188)||(19033106-19033171)
[»] chr5 (7 HSPs)
chr5 (6-139)||(41341338-41341477)
chr5 (6-135)||(14168820-14168955)
chr5 (122-188)||(41340401-41340466)
chr5 (139-188)||(5963805-5963854)
chr5 (122-173)||(14169052-14169103)
chr5 (6-99)||(36389131-36389221)
chr5 (131-188)||(41341577-41341634)
[»] chr4 (7 HSPs)
chr4 (6-129)||(47680804-47680934)
chr4 (7-113)||(10396330-10396436)
chr4 (6-126)||(47681051-47681180)
chr4 (40-184)||(26473480-26473633)
chr4 (6-80)||(47680316-47680391)
chr4 (30-139)||(8445743-8445853)
chr4 (6-93)||(34946248-34946335)
[»] chr8 (2 HSPs)
chr8 (6-169)||(5981579-5981750)
chr8 (33-91)||(2954388-2954447)
[»] chr6 (5 HSPs)
chr6 (56-188)||(22605164-22605291)
chr6 (98-188)||(21118867-21118958)
chr6 (117-188)||(9362819-9362890)
chr6 (131-188)||(22604999-22605056)
chr6 (57-99)||(7301488-7301530)
[»] chr1 (3 HSPs)
chr1 (7-99)||(31973473-31973565)
chr1 (13-165)||(43834350-43834509)
chr1 (32-99)||(34665971-34666039)
[»] chr2 (1 HSPs)
chr2 (41-93)||(44981933-44981987)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 188
Target Start/End: Complemental strand, 8802514 - 8802326
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc----- 99  Q
    |||||| |||||||||| | ||||||||||||| ||  ||||||||| ||| |||  |||||||||||| ||||||| |||||||||||||||||         
T  8802514 ggacataatcactcacactagattacccaacaatctttccctcaagtgtgaatcagccacatcactagcctgatccatactaggatcccgctcccgctcc 8802415  T
Q  100 ccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||| |||  ||  |||||||||||||||||| ||||||||||||||    
T  8802414 ccactgagcctaaccatggctctgataccactgttggggagtccggagagtcccaagagcggcaatgggccaaacgtccaagaccataa 8802326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 11776201 - 11776349
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctcccccact 104  Q
    |||||| |||| ||||| |||| | |||||||| ||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||||||     
T  11776201 ggacataatcattcacacttgaat-cccaacaatctccccctcaagtatgagtcacccacatcactagcctgatccacgctaggatcccgct-ccccacc 11776298  T
Q  105 aagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccg 154  Q
     |||||||||| || ||||||||||  ||||||| ||||| ||||||||||    
T  11776299 gagcctaaccagggttctgataccagttgttggggagtccagggagcgccg 11776349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 21416278 - 21416371
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    |||||| |||||||||| |||||| || || ||  ||||||| |||| ||| |||| |||||||||||  |||||||||||||||||||||||||    
T  21416278 ggacataatcactcacacttgatt-cctaaaaatttccccctgaagtgtgactcacccacatcactaggatgatccacactaggatcccgctccc 21416371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 8802681 - 8802622
Alignment:
Q  129 actgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||||||||| |||||| || || ||| ||||||||||||| |||||||||| ||||||||    
T  8802681 actgttggggagtccgcggtgccccgcgagcggcaatgggtcaaatgtccatgaccataa 8802622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 17732041 - 17732230
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc----- 99  Q
    |||||| |||||||||| ||||||| ||||||| ||||| ||||||| ||| |||  |||||||||||| ||||||| |||||||||||||||||         
T  17732041 ggacataatcactcacacttgattatccaacaacctcccactcaagtgtgaatcatccacatcactagcctgatcca-actaggatcccgctcccgctcc 17732139  T
Q  100 ccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataatg 190  Q
    ||||| |||||||||||||||||||||||||||||||| |||  ||||||| |  |||| ||||||||||||||||| || ||| ||||||    
T  17732140 ccactgagcctaaccacggctctgataccactgttggggagtttggggagccctaggagtggcaatgggccaaatgttcaggactataatg 17732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 19033272 - 19033461
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc----- 99  Q
    |||||| |||||||||| ||||||| ||||||| ||||| ||||||| ||| |||  |||||||||||| ||||||| |||||||||||||||||         
T  19033272 ggacataatcactcacacttgattatccaacaacctcccactcaagtgtgaatcatccacatcactagcctgatcca-actaggatcccgctcccgctcc 19033370  T
Q  100 ccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataatg 190  Q
    ||||| |||||||||||||||||||||||||||||||| |||  ||||||| |  |||| ||||||||||||||||| || ||| ||||||    
T  19033371 ccactgagcctaaccacggctctgataccactgttggggagtttggggagccctaggagtggcaatgggccaaatgttcaggactataatg 19033461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 40195959 - 40196147
Alignment:
Q  8 acatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctc------ccc 100  Q
    |||| |||||||||| |||||| |||||||| ||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||      |||    
T  40195959 acataatcactcacacttgatttcccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatccacactaggatcccgctcccgctaccc 40196058  T
Q  101 cactaagcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||| |||||||||||  ||||||||||||  ||||||| || ||||||||| ||  ||||||||||||||||||  || ||||||||||    
T  40196059 caccaagcctaaccagagctctgataccagttgttggggagaccggggagccccaagagcggcaatgggccaaacatctaagaccataa 40196147  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 184
Target Start/End: Original strand, 16869649 - 16869829
Alignment:
Q  6 ggacatcatcactcacatttgattaccc-aacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctcccccac 103  Q
    |||||| |||||||||| |||||||||| ||||  |||| |||||||| ||| |||| |||||||||||| |||||||||||||||||  ||| ||||||    
T  16869649 ggacataatcactcacacttgattaccctaacattctcctcctcaagtgtgaatcacccacatcactagcatgatccacactaggatcttgct-ccccac 16869747  T
Q  104 taagcctaaccacggctctgataccactgttggga-agtccggggagcgccgggagcggcaatgggccaaatgtccaagacc 184  Q
      |||||||||||| || |||||||||| || ||| |||||||||||||| ||||||||||||| || |||| |||| ||||    
T  16869748 cgagcctaaccacgactttgataccactttttggagagtccggggagcgctgggagcggcaatgtgctaaatatccacgacc 16869829  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 54017686 - 54017779
Alignment:
Q  7 gacatcatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||| |||||||||||||| ||||||||||    
T  54017686 gacataatcactcacacttgattacccaacaatctccccctcaagtgtgaatcacccacatcactagcctgatccacactagggtcccgctccc 54017779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 43978712 - 43978837
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatccacactagg--atcccgctccccca 102  Q
    |||||| |||||||||| ||||||  ||||||| ||||||||||||| || ||||| ||||||||||| |||||||||||||||  |||||||||||| |    
T  43978712 ggacataatcactcacacttgattttccaacaatctccccctcaagtgtgaatcac-cacatcactagtttgatccacactaggatatcccgctccccaa 43978810  T
Q  103 ctaagcctaaccacggctctgatacca 129  Q
    |  |||||||||| |||| | ||||||    
T  43978811 ccgagcctaaccatggctataatacca 43978837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 16143457 - 16143366
Alignment:
Q  8 acatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    |||| |||||||||| |||||| || ||||| ||||||||||||| ||| |||| |||||||||||  ||||||||||||| |||||||||||    
T  16143457 acattatcactcacacttgatttcc-aacaatctccccctcaagtgtgactcacccacatcactaggatgatccacactagaatcccgctccc 16143366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 32201059 - 32200975
Alignment:
Q  7 gacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatc 91  Q
    ||||| ||||||||||||||||| |||||||| |||||||| |||  ||| |||| |||||||||||| ||||| ||| |||||||    
T  32201059 gacataatcactcacatttgatt-cccaacaatctcccccttaagcgtgactcacccacatcactagcatgatctacattaggatc 32200975  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 23162308 - 23162358
Alignment:
Q  118 gctctgataccact-gttgggaagtccggggagcgccgggagcggcaatgg 167  Q
    |||||||||||| | |||||| |||||||||||| ||||||||||||||||    
T  23162308 gctctgataccagttgttggggagtccggggagctccgggagcggcaatgg 23162358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 32201317 - 32201251
Alignment:
Q  34 aacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    ||||| ||||||||||||| ||| |||| ||||||||||| | || | |||||||||||||||||||    
T  32201317 aacaatctccccctcaagtgtgactcacccacatcactagttggacctacactaggatcccgctccc 32201251  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 17731875 - 17731940
Alignment:
Q  123 gataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||||||||||||| |||||  ||||||| | ||||||||||||||| |||| ||  ||||||||||    
T  17731875 gataccactgttgtgaagtttggggagccctgggagcggcaatgggtcaaacgtttaagaccataa 17731940  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 19033106 - 19033171
Alignment:
Q  123 gataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||||||||||||| |||||  ||||||| | ||||||||||||||| |||| ||  ||||||||||    
T  19033106 gataccactgttgtgaagtttggggagccctgggagcggcaatgggtcaaacgtttaagaccataa 19033171  T

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Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 41341477 - 41341338
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctc-----cc 99  Q
    |||||| |||||||||| |||||||||||| || ||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||     ||    
T  41341477 ggacataatcactcacacttgattacccaataatctccccctcaagtgtgaatcacccacatcactagcctgatccacactaggatcccgctctcgctcc 41341378  T
Q  100 ccactaagcctaaccacggctctgataccactgttgggaa 139  Q
    ||||| ||||||||||||||||| ||||||||||| ||||    
T  41341377 ccactgagcctaaccacggctctaataccactgttaggaa 41341338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 14168955 - 14168820
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatg-atcactcacatcactagcttgatccacactaggatcccgctc-----cc 99  Q
    |||||| ||| || ||| ||||||| ||||||| |||||||||||||||| ||||  |||||||||||| ||||||||||||| |||| | ||     ||    
T  14168955 ggacataatcccttacacttgattatccaacaatctccccctcaagtatgaatcatccacatcactagcatgatccacactagaatcctgttcccgctcc 14168856  T
Q  100 ccactaagcctaaccacggctctgataccactgttg 135  Q
    ||||||||||||||||||||||||||||||||||||    
T  14168855 ccactaagcctaaccacggctctgataccactgttg 14168820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 41340466 - 41340401
Alignment:
Q  122 tgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||| |||| ||||||||||||||    
T  41340466 tgataccactgttggggagtccggggagcctcgggagcggcaatggg-caaacgtccaagaccataa 41340401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 5963854 - 5963805
Alignment:
Q  139 agtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    |||||||||||| ||||||||||||||||| |||| ||||| ||||||||    
T  5963854 agtccggggagccccgggagcggcaatgggtcaaacgtccaggaccataa 5963805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 14169103 - 14169052
Alignment:
Q  122 tgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaa 173  Q
    |||||||||||||||| | |||||||||| || |||||||||||||| ||||    
T  14169103 tgataccactgttggggaatccggggagccccaggagcggcaatgggacaaa 14169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 36389131 - 36389221
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatgatcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    |||||| ||||||| || |||||| |||||||||||||||||||||| ||| | | |||||||||||   |||||| |||||||| ||||||||    
T  36389131 ggacattatcactcgcacttgatt-cccaacaaactccccctcaagtttga-ctcccacatcactaggacgatcca-actaggattccgctccc 36389221  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 41341634 - 41341577
Alignment:
Q  131 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||||||| ||| |||||||| || ||||||||||||||||||| ||||| ||| ||||    
T  41341634 tgttggggagtacggggagccccaggagcggcaatgggccaaacgtccaggactataa 41341577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 47680934 - 47680804
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactagga------tcccgctcc 98  Q
    |||||| |||||||||| |||||| |||||||| ||||||||||||| ||| |||| |||||||||||| |||||| ||||||||      |||||||||    
T  47680934 ggacataatcactcacacttgatttcccaacaatctccccctcaagtgtgagtcacccacatcactagcctgatcctcactaggatcccactcccgctcc 47680835  T
Q  99 cccactaagcctaaccacggctctgatacca 129  Q
    |||||| |||||||||| |||||||||||||    
T  47680834 cccactgagcctaaccagggctctgatacca 47680804  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 10396436 - 10396330
Alignment:
Q  7 gacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctcccccacta 105  Q
    ||||| |||||||||| |||||| || ||||| ||||||||||||||||| || | |||||||||||  ||||||||||||||||||| ||||||||  |    
T  10396436 gacataatcactcacacttgatttcc-aacaatctccccctcaagtatgactcgcccacatcactaggatgatccacactaggatcccactcccccagaa 10396338  T
Q  106 agcctaac 113  Q
    ||||||||    
T  10396337 agcctaac 10396330  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 47681180 - 47681051
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatgat---cactcacatcactagcttgatccacactagga------tcccgct 96  Q
    |||||| |||||||||| || ||| |||||||| ||||||||||||| || |   ||| |||||||||||| |||||| ||||||||      |||||||    
T  47681180 ggacataatcactcacactttatttcccaacaatctccccctcaagtgtgttagtcacccacatcactagcctgatcctcactaggatcccactcccgct 47681081  T
Q  97 cccccactaagcctaaccacggctctgata 126  Q
    |||||||| |||||||| | ||||||||||    
T  47681080 cccccactgagcctaactagggctctgata 47681051  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 26473480 - 26473633
Alignment:
Q  40 ctccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc-------ccactaagcctaaccacggctctgataccact 131  Q
    ||||||||||| | ||| |||| ||||||||| || ||||||| || ||||||||||||||       ||||  ||| |||||| ||||||||||||| |    
T  26473480 ctccccctcaattgtgagtcacccacatcacttgcctgatccagacaaggatcccgctcccgctccccccaccgagcttaaccaaggctctgataccaat 26473579  T
Q  132 -gttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagacc 184  Q
     | |||| ||| |||||||||||||||| | |||||||| ||| ||||| ||||    
T  26473580 tgctggggagttcggggagcgccgggagtgccaatgggctaaacgtccaggacc 26473633  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 47680391 - 47680316
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatcc 80  Q
    |||||| |||||||||| |||||| |||||||| ||||||||||| | ||| |||| ||||||| |||| ||||||    
T  47680391 ggacataatcactcacacttgatttcccaacaatctccccctcaactgtgagtcacccacatcattagcctgatcc 47680316  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 8445853 - 8445743
Alignment:
Q  30 acccaacaaactccccctcaagtatgat-cactcacatcactagcttgatccacactaggatcccgctccc------ccactaagcctaaccacggctct 122  Q
    ||||||||| ||||||||||||| |||| ||| ||||||||||      |||||||||||||||| |||||      ||||  |||||||||| ||||||    
T  8445853 acccaacaatctccccctcaagtgtgattcacccacatcacta------tccacactaggatcccactcccgctaccccaccgagcctaaccagggctct 8445760  T
Q  123 gataccactgttgggaa 139  Q
    |||||||||||| ||||    
T  8445759 gataccactgttaggaa 8445743  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 34946248 - 34946335
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatccc 93  Q
    |||||| |||||||||| |||||| || ||||| ||||| ||||||| ||| |||| |||||||||||  ||||||| |||| ||||||    
T  34946248 ggacattatcactcacacttgatttcc-aacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatccc 34946335  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 5981579 - 5981750
Alignment:
Q  6 ggacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctc-----cc 99  Q
    |||||| |||||||||| |||||| || ||||| ||||||||||||  ||| |||| |||||||||||| |||||||||||||||||||||||     ||    
T  5981579 ggacataatcactcacacttgatttccaaacaatctccccctcaagcgtgagtcacccacatcactagcctgatccacactaggatcccgctcccactcc 5981678  T
Q  100 ccactaagcctaaccacggctctgataccact--gttgggaagtccggggagcgccgggagcggcaatgggc 169  Q
    ||||  |||||||||| || |||||||||| |   | ||| ||||||||||||| || ||||||||||||||    
T  5981679 ccaccgagcctaaccagggttctgataccatttcttgggggagtccggggagcgtcgagagcggcaatgggc 5981750  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 2954388 - 2954447
Alignment:
Q  33 caacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatc 91  Q
    |||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||    
T  2954388 caacaatctccccctcaagtgtgagtcacccacatcactagcttgatccacactaggatc 2954447  T

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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 22605164 - 22605291
Alignment:
Q  56 atcactcacatcactagcttgatccacactaggatcccgctccc-----ccactaagcctaaccacggctctgataccactgttgggaagtccggggagc 150  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||     ||||| ||||||||||||||| |||||||| ||||         |||||||    
T  22605164 atcacccacatcactagcctgatc-acactaggatcccgctcccgctccccactgagcctaaccacggctttgataccattgtt---------ggggagc 22605253  T
Q  151 gccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
     |||||||||||||||||||||| ||||||||||||||    
T  22605254 cccgggagcggcaatgggccaaacgtccaagaccataa 22605291  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 21118867 - 21118958
Alignment:
Q  98 ccccactaagcctaaccacggctctgataccactgttgggaagtccggggagcgc-cgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    |||||||||||||||||||| ||||||||||||||||||| | | |||||||| |  |||||||||||||||||| | ||||| ||| ||||    
T  21118867 ccccactaagcctaaccacgactctgataccactgttggggacttcggggagccctggggagcggcaatgggccagacgtccaggactataa 21118958  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 9362819 - 9362890
Alignment:
Q  117 ggctctgataccactgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    |||||| ||||||| |||||| ||||| |||||| ||||||||||||||||| |||| ||||| ||||||||    
T  9362819 ggctctcataccaccgttggggagtccagggagccccgggagcggcaatgggacaaacgtccaggaccataa 9362890  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 22604999 - 22605056
Alignment:
Q  131 tgttgggaagtccggggagcgccgggagcggcaatgggccaaatgtccaagaccataa 188  Q
    ||||||| || ||||||||| || | ||||||||||||||||||||||||||||||||    
T  22604999 tgttggggagcccggggagccccagaagcggcaatgggccaaatgtccaagaccataa 22605056  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 7301488 - 7301530
Alignment:
Q  57 tcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    |||| |||||||||||| ||||||||| |||||||||||||||    
T  7301488 tcacccacatcactagcctgatccacattaggatcccgctccc 7301530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 31973473 - 31973565
Alignment:
Q  7 gacatcatcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatcccgctccc 99  Q
    ||||| |||||||||| |||||| || ||||| ||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||    
T  31973473 gacataatcactcacacttgatttcc-aacaatctccccctcaagtgtgactcactcacatcactagtctgatccacactaggatcccgctccc 31973565  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 43834509 - 43834350
Alignment:
Q  13 atcactcacatttgattacccaacaaactccccctcaagtatga-tcactcacatcactagcttgatccacactaggatc------ccgctcccccacta 105  Q
    |||||||||| ||||  ||||||||| |||| |||||||| ||| ||||||||||||||||| |||||||||||||||||      |||||||||||       
T  43834509 atcactcacacttgaa-acccaacaatctccacctcaagtgtgagtcactcacatcactagcctgatccacactaggatcccacttccgctcccccatcg 43834411  T
Q  106 agcctaaccacggctctgatacca-ctgttgggaagtccggggagcgccgggagcggcaat 165  Q
     ||||||||| || ||||||||||  ||||||| |||  ||||||||||||||||| ||||    
T  43834410 ggcctaaccagggttctgataccagttgttggggagttaggggagcgccgggagcgacaat 43834350  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 34665971 - 34666039
Alignment:
Q  32 ccaacaaactccccctcaagtatgatc-actcacatcactagcttgatccacactaggatcccgctccc 99  Q
    ||||||| ||| ||||||||| ||||  ||||||||||||||  |||||||||||||||||||||||||    
T  34665971 ccaacaatctctccctcaagtgtgatttactcacatcactagtgtgatccacactaggatcccgctccc 34666039  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 44981933 - 44981987
Alignment:
Q  41 tccccctcaagtatga-tcactcacatcactagc-ttgatccacactaggatccc 93  Q
    |||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||    
T  44981933 tccccctcaagtgtgagtcacccacatcactagccttgatccacactaggatccc 44981987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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