View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2566_low_7 (Length: 590)
Name: NF2566_low_7
Description: NF2566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2566_low_7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 55 - 590
Target Start/End: Original strand, 7709225 - 7709767
Alignment:
| Q |
55 |
tcacaagttgtaaagacaatattagtccaaattgaatgaaccagtgttaatcattaatttatgtgaatcttcataatctatactatcttctatatattgc |
154 |
Q |
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| T |
7709225 |
tcacaagttgtaaagacaagattagtccaaattgaatgaacctgtgttaatcattaatttatgtgaatcttcataatctatactatcttctatatattgc |
7709324 |
T |
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| Q |
155 |
ttcatttattcacacattcttcacacacattaaattttcattaacgtaa---tattgttttgctttaagtcatcatcaacaagaggaagatctattatag |
251 |
Q |
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| T |
7709325 |
ttcatttattcacacattcttcaaacacattaaattttcattaacgtaatactattatttttctttaagtcatcat-aacaagaggaagatctaatatag |
7709423 |
T |
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| Q |
252 |
ttttacattgttcacacacattaatgtttcattaacgtcataatatagtttcacattggtgttcaatttttgtcaagtacaataattttatatccaaacc |
351 |
Q |
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| T |
7709424 |
ttttgcattgttcacacacattaatgtttcattaacgtcataa-----tttcacattggtgttcaatttttgtcaagtacaataattttatatccaaacc |
7709518 |
T |
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| Q |
352 |
tctatttgaatgcaattgataaataataatgtgtttgtttaaaaaa---------caatattttcgaagcaaaaccatgtaaata-taatgattctacat |
441 |
Q |
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| T |
7709519 |
tctatttgaatgtaattgataaataataatgtgtttgtttataaaattataccattaatactttcgaagcaaaaccatgtaaatattaatgattctacat |
7709618 |
T |
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| Q |
442 |
caaattatgcaacattattggtagaggttgttgcatctttaacattgacatcggcagcggtatttgacgagctagcgggctttgttgcatctctagcatt |
541 |
Q |
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| T |
7709619 |
caaattatacaacattattggtagaggttgttgcatctttaacattgacattggcagcggtatttgacgagctagcgggctttgttgcatctctagcatt |
7709718 |
T |
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| Q |
542 |
gacattgacagcggtagttgacgagctagcatgatttgttgcatctcta |
590 |
Q |
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| T |
7709719 |
gacattgacaacggtagttgacgagctagcgagatttgttgaatctcta |
7709767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 469 - 590
Target Start/End: Original strand, 7709700 - 7709821
Alignment:
| Q |
469 |
ttgttgcatctttaacattgacatcggcagcggtatttgacgagctagcgggctttgttgcatctctagcattgacattgacagcggtagttgacgagct |
568 |
Q |
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| T |
7709700 |
ttgttgcatctctagcattgacattgacaacggtagttgacgagctagcgagatttgttgaatctctagcattgacattgacagcggtatttgacgggct |
7709799 |
T |
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| Q |
569 |
agcatgatttgttgcatctcta |
590 |
Q |
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| T |
7709800 |
agcaggctgtgttgaatctcta |
7709821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 542
Target Start/End: Original strand, 7709754 - 7709827
Alignment:
| Q |
469 |
ttgttgcatctttaacattgacatcggcagcggtatttgacgagctagcgggctttgttgcatctctagcattg |
542 |
Q |
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| T |
7709754 |
ttgttgaatctctagcattgacattgacagcggtatttgacgggctagcaggctgtgttgaatctctagcattg |
7709827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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