View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2567_low_1 (Length: 536)
Name: NF2567_low_1
Description: NF2567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2567_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 507
Target Start/End: Original strand, 4174711 - 4175203
Alignment:
| Q |
13 |
gagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtgg |
112 |
Q |
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| T |
4174711 |
gagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatcctgcacgtaacccttttccatagatgtaattcacccgtag |
4174810 |
T |
|
| Q |
113 |
ctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggat |
212 |
Q |
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| T |
4174811 |
ctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtaatttggctcagaaaatcccatccacttagctatcggggat |
4174910 |
T |
|
| Q |
213 |
cgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttttaggaccagagcttcatgattggccattatgtttgtaag |
312 |
Q |
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| T |
4174911 |
cgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttttaggaccagagcttcatgattggccattatgtttgtaag |
4175010 |
T |
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| Q |
313 |
atccttttctgcactatgtttttagagtcataaccaatcatgtatgtgcttagctttatata-nnnnnnnnattagaatcgtgtttaaacacatttgaca |
411 |
Q |
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| T |
4175011 |
atccttttctgcactatgtttttagagtcataaccaatcatatatgtgcttagcttcatatatatatttttattagaatcgtgtttaaacacatttgaca |
4175110 |
T |
|
| Q |
412 |
aaagccaaatgctttttcaactaagttcggtaaaaataataaaatcacggttgaatgagtaaatttcaacaccaaacacaccataaatcacaatga |
507 |
Q |
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| T |
4175111 |
caagccaaatgttttttcaactaagttcggtaaa---aataaaatcacggttgaatgagtaaatttcaacaccaaacacaccataaatcacaatga |
4175203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 520
Target Start/End: Original strand, 4170716 - 4171234
Alignment:
| Q |
13 |
gagatgaactattgaaggtgacaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtgg |
112 |
Q |
| |
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|||||||||| |||||| || ||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
4170716 |
gagatgaactgttgaagcagataaaccaatagactttggttggagaaacaggaacatatcctgcgcgtaacccttttccatagatgtaattcacccgtgg |
4170815 |
T |
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| Q |
113 |
ctcaaaaggttgtccatctgaataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggat |
212 |
Q |
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| T |
4170816 |
ttgaaaaggttgtccgtctgaataggaggcaagtccacggaaagcacaatgaccaacgaactttggctcagaaaatcccatccacttagctatcggtgat |
4170915 |
T |
|
| Q |
213 |
cgaatgccgtcgcaccctattacaatctgttgagacatgaaatcaatttgttaatagtttttaggaccagagcttcatgattggcca-------ttatgt |
305 |
Q |
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| T |
4170916 |
cgaattccgtcgcaccctattacaatctgtttatacatggaatcaatttgttaagactttttaggactaaagcttcagaattggctattaatgtttatgt |
4171015 |
T |
|
| Q |
306 |
ttgtaagatccttttctgcactatgtttttagagtcataaccaatcatgtatgtgcttagctttata------tannnnnnnnattagaatcgtgtttaa |
399 |
Q |
| |
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|||||||||||||| |||| |||||||| | |||| |||||||| ||||| ||||||| ||| | || |||||| ||||||| |
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| T |
4171016 |
ctgtaagatccttttgtgcagtatgttttcatggtcacaaccaatc----atgtggttagcttaatagtatgttttttttttcatcagaatcatgtttaa |
4171111 |
T |
|
| Q |
400 |
acacatttg--acaaaagccaaatgctttttcaactaagttcggtaaaaataataaaatcacggttgaatgagtaaatttcaacaccaaacacaccataa |
497 |
Q |
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||||| ||| ||| || ||||||| ||| |||||| |||| | || | ||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
4171112 |
acacagttggaacagaaaccaaatgttttgtcaactgagtttgtaaatactaataaaatcatggttgaataagtaactttcaacaccaaacacaccataa |
4171211 |
T |
|
| Q |
498 |
atcacaatgactaacctttgcaa |
520 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
4171212 |
attacaatgactaacctttgcaa |
4171234 |
T |
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