View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2567_low_2 (Length: 378)
Name: NF2567_low_2
Description: NF2567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2567_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 67 - 305
Target Start/End: Complemental strand, 41802105 - 41801856
Alignment:
| Q |
67 |
tttttagagggatgaattaaacgagacaaattgttttagatc-----------tcatgtttgggacttcatcttacaatggttttgattgaaaattctat |
155 |
Q |
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| T |
41802105 |
tttttaaagggataaattaaacgagacaaattgttttagatcagaatataatctcatgtttgggacttcatcttacaatggttttgattgaaaattctat |
41802006 |
T |
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| Q |
156 |
atacactgtaaaattgaaaattgcccgaatcgtatatgcgaaacctcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaaga |
255 |
Q |
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| T |
41802005 |
atacactgtaaaattgaaaattgtcctagtcgtatatgcgaagcttcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaaga |
41801906 |
T |
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| Q |
256 |
ggtggtaaaaacacacttcaaactcatgaacactaatttaattgagtttt |
305 |
Q |
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| T |
41801905 |
ggtggtaaaaacacacttcaaactcatgaacactaatttaattgagtttt |
41801856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 41802560 - 41802511
Alignment:
| Q |
29 |
cgttcttaattgtgttaatttgtaagcaacttgcacaatttttagaggga |
78 |
Q |
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| T |
41802560 |
cgttcttaattgtgttaatttataagcaacttgcataatttttagaggga |
41802511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 3382202 - 3382511
Alignment:
| Q |
21 |
ttagtggccgttcttaattgtgttaatttgtaagcaacttgcacaatttttagagggatgaattaaacgagacaaattgttttagatc-----------t |
109 |
Q |
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| T |
3382202 |
ttagtggttgttcttaattgtgttaatttgtgagcaacttgcacaatatttagagggataaattaaacgagacaaattgttgtagatcagaatatatatt |
3382301 |
T |
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| Q |
110 |
catgtttgggacttcatcttacaatggttttgattgaaaattctatatacactgtaaaat----------tgaaaattgcccgaatcgtatatgcgaaac |
199 |
Q |
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| T |
3382302 |
catatttgggacttcatcttgaa--ggttttgattgaaaattctatataaactataaaatgtaaaagattttaaaattgccccaatcgtatatgtgaaac |
3382399 |
T |
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| Q |
200 |
ctcatggcttgtgaaagagacaaggaaatttgattgagggaaacaaacttctaagaggtggtaaaaacacacttcaaactcatgaacactaatttaattg |
299 |
Q |
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| T |
3382400 |
ttcatggcttgtgaaagagacagtaaaatattatcgagggaaacaaactcctgagaggtggtaaaagcacacttcaaactcctgaacgctaatttaatta |
3382499 |
T |
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| Q |
300 |
agttttcttttt |
311 |
Q |
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| T |
3382500 |
agtttttttttt |
3382511 |
T |
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