View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_10 (Length: 438)
Name: NF2568_high_10
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 11035854 - 11036273
Alignment:
| Q |
1 |
aagatgatgctgttccagatggcgaaggcgacacgtgtgccgtgtgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttgca |
100 |
Q |
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| T |
11035854 |
aagatgatgctgttccagatggcgaaggcgacacgtgtgccgtgtgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttaca |
11035953 |
T |
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| Q |
101 |
ctcttttcatgtttcatgtattgacatgtggcttcattcgcattcgaattgccctgtttgtcgttccagtaccgccccttcaccggcggtgaatgg---g |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
11035954 |
ctcttttcatgtttcatgtattgacatgtggcttcattcacattcgaattgccccgtttgtcgttccagtaccgccccttcaccggtggtgaatgggcag |
11036053 |
T |
|
| Q |
198 |
cagcagcagcagcacaacatagatatgcctcatactaatatggttccacttgctatcatgcaaagtggacttgtgagatggtgagaacctttttctctta |
297 |
Q |
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| T |
11036054 |
cagcagcagcagcacaacatagatatgcctcatactaatatggttccacttgctatcatgcaaagtggacttgtgagatggtgagaacctttttctctta |
11036153 |
T |
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| Q |
298 |
tcttgccgagaggtaaataccacatgaaatgaaattcgctcacataaatgggaagattttgattatgaggattttgaggagtcacaccagcaaagtacac |
397 |
Q |
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| T |
11036154 |
tcttgccgagaggtaaataccac-----atgaaattcgctcacataaatggggagattttgattatgaggattttgaggagtcacaccagcaaagtgcac |
11036248 |
T |
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| Q |
398 |
acaactaacttaggaatatcaaaac |
422 |
Q |
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| T |
11036249 |
acaactaacttaggaatatcaaaac |
11036273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 11034180 - 11034356
Alignment:
| Q |
11 |
tgttccagatggcgaaggcgacacgtgtgccgtgtgtttgggagattttgaggagggtgaagagttgaggactatgcctgagtgcttgcactcttttcat |
110 |
Q |
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|||| |||||| |||||||| ||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
11034180 |
tgttacagatgacgaaggcggcacatgtgcggtgtgtttgggagattttgaggaaggtgaggaattgaggactatgcctgagtgcttgcattcttttcat |
11034279 |
T |
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| Q |
111 |
gtttcatgtattgacatgtggcttcattcgcattcgaattgccctgtttgtcgttccagtaccgccccttcaccggc |
187 |
Q |
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|| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
11034280 |
gtaaagtgtattgacatgtggctccattcgcatttgaattgccccgtttgtcgttccagtgccgccccttcgccggc |
11034356 |
T |
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