View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_14 (Length: 422)
Name: NF2568_high_14
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 55954785 - 55954385
Alignment:
| Q |
18 |
aatgaaaccagaggacttggatatgactgaagcctttggagctgcagcggctaggggaaatggcctgtatttgattccaactccacattgattcagcgat |
117 |
Q |
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| T |
55954785 |
aatgaaaccagaggacttggatatgactgaagcctttggagctgcagcggctaggagaaatggcctgtatttgattccaactccacattgattcagcgat |
55954686 |
T |
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| Q |
118 |
gttatttatcacgagaacaaaaatcgtgaaaccatcacgaaacatgtattatagttaaaatgactcagtggcaaatgtccggaattaacaaaaatcaggt |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55954685 |
gttatttatcacgaggacaaaaatcgtgaaaccatcacgaaacatgtattatagttaaaatgactcagtggcagatgtccggaattaacaaaaatcaggt |
55954586 |
T |
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| Q |
218 |
aagcaggtaactaaaat----acttatcgtgatggattcgtgcannnnnnnccgctatacatatcatttcccttctttgctaatcatagcattttcctat |
313 |
Q |
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| T |
55954585 |
aagcaggtaactaaaatatacacttatcgtgatggattcgtgcatttttttccgctatacatatcatttcccttctttgctaatcatagcattttcctat |
55954486 |
T |
|
| Q |
314 |
ttgattattcccttcaaaaaattatcgtcagcacttgtaacaaaaattcattgtcagcactttattctatttgagatcatccaatatatttcccctttgc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55954485 |
ttgattattcccttcaaaaaattatcgtcagcacttgtaacaaaaattcattgtcagcactttattctatttgagatcatccaatatatttcccttttgc |
55954386 |
T |
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| Q |
414 |
t |
414 |
Q |
| |
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| T |
55954385 |
t |
55954385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 55958338 - 55958254
Alignment:
| Q |
18 |
aatgaaaccagaggacttggatatgactgaagcctttggagctgcagcggctaggggaaatggcctgtatttgattccaactcca |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||| |
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| T |
55958338 |
aatgaaaccagaggacttggatatgactgaagcctttggagctgttgtggctaggagaaacaacctgtatttgattccaactcca |
55958254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 41795551 - 41795369
Alignment:
| Q |
18 |
aatgaaaccagaggacttggatatgactgaagcctttggagctgcagcggctaggggaaatggcctgtatttgattccaactccacattgattcagcgat |
117 |
Q |
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|||||||||||| ||||| |||| ||||||| |||| ||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41795551 |
aatgaaaccagacgacttagataagactgaatccttgggagctgcaacggctaggagaaatggcctgtatttgattcctactccacattgattcagcgac |
41795452 |
T |
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| Q |
118 |
gttatttatcacgagaacaaaaatcgtgaaaccatcacgaaacatgtattatagttaaaatgactcagtggcaaatgtccggaat |
202 |
Q |
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| T |
41795451 |
gctatttatcgtgagggaaaaatttgtgaaaccatcatgaagcatgtgttatggttaaaatgact--atggcaaaagtccggaat |
41795369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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