View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_16 (Length: 421)
Name: NF2568_high_16
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_16 |
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| [»] scaffold0483 (1 HSPs) |
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| [»] scaffold0109 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 40582052 - 40582136
Alignment:
| Q |
1 |
ttattcatttactccctttgattcaaaacgataccgattggttttgtaa----aattccagggtcaggcaatctcattcaataca |
81 |
Q |
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| T |
40582052 |
ttattcatttactccctttgattcaaaacgataccgattggttttgtaaaattaattccagggtcaggcaatctctctcaataca |
40582136 |
T |
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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 40582190 - 40582242
Alignment:
| Q |
79 |
acatcataaaaagcacatccattacaaataatattgattatgagattatataa |
131 |
Q |
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| T |
40582190 |
acatcataaaaagcacatccataacaaataatattgattatgagactatataa |
40582242 |
T |
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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 403
Target Start/End: Original strand, 40582282 - 40582323
Alignment:
| Q |
362 |
gtataatgcaagacgcacaaaatacataaggtgccgcatata |
403 |
Q |
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| T |
40582282 |
gtataatgcaagacgcacaaaatacacaaggtgccgcatata |
40582323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 1344 - 1254
Alignment:
| Q |
232 |
tgctttagatggcgctttatacagnnnnnnngcgttatattacttttactagcgctatttatattatcgcttctaaagcgctagctaaagc |
322 |
Q |
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| T |
1344 |
tgctttagatagcgctttatacagaaaaaaagcgctatattacctttaccagcgccatttatattagcgctttgaaagcgctagctaaagc |
1254 |
T |
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Target: scaffold0109 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0109
Description:
Target: scaffold0109; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 46131 - 46041
Alignment:
| Q |
232 |
tgctttagatggcgctttatacagnnnnnnngcgttatattacttttactagcgctatttatattatcgcttctaaagcgctagctaaagc |
322 |
Q |
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| T |
46131 |
tgctttagatagcgctttatacagaaaaaaagcgctatattacctttaccagcgccatttatattagcgctttgaaagcgctagctaaagc |
46041 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 28451728 - 28451760
Alignment:
| Q |
333 |
gcgctatataagttcatttttgtagtagtgtat |
365 |
Q |
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| T |
28451728 |
gcgctatataagtccatttttgtagtagtgtat |
28451760 |
T |
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