View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_high_22 (Length: 368)

Name: NF2568_high_22
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_high_22
NF2568_high_22
[»] scaffold0598 (1 HSPs)
scaffold0598 (65-347)||(7816-8109)
[»] chr4 (31 HSPs)
chr4 (268-350)||(20743255-20743337)
chr4 (272-343)||(31243529-31243600)
chr4 (287-350)||(24343507-24343570)
chr4 (287-349)||(3144648-3144710)
chr4 (309-350)||(32910551-32910592)
chr4 (298-350)||(34515881-34515933)
chr4 (309-352)||(37203262-37203305)
chr4 (309-342)||(21945511-21945544)
chr4 (288-344)||(30520433-30520490)
chr4 (290-343)||(53968553-53968606)
chr4 (271-350)||(7012066-7012145)
chr4 (304-352)||(18513254-18513302)
chr4 (231-267)||(19230241-19230277)
chr4 (309-349)||(29205445-29205485)
chr4 (304-352)||(43299984-43300032)
chr4 (304-352)||(43300614-43300662)
chr4 (271-350)||(6273944-6274023)
chr4 (291-350)||(16402211-16402270)
chr4 (240-291)||(35239178-35239229)
chr4 (304-350)||(5654604-5654650)
chr4 (231-269)||(30299010-30299048)
chr4 (231-269)||(30327878-30327916)
chr4 (231-269)||(40784034-40784072)
chr4 (309-343)||(50848321-50848355)
chr4 (231-269)||(53381530-53381568)
chr4 (309-342)||(11596370-11596403)
chr4 (309-342)||(28964266-28964299)
chr4 (315-352)||(43188610-43188647)
chr4 (309-342)||(54580041-54580074)
chr4 (227-267)||(824212-824252)
chr4 (304-344)||(10546154-10546194)
[»] chr7 (27 HSPs)
chr7 (228-343)||(29812595-29812716)
chr7 (286-350)||(23930219-23930283)
chr7 (294-350)||(13427576-13427632)
chr7 (286-350)||(43249993-43250057)
chr7 (291-350)||(23751900-23751959)
chr7 (286-344)||(10230068-10230126)
chr7 (286-350)||(7133273-7133337)
chr7 (286-350)||(38804550-38804614)
chr7 (304-352)||(44020973-44021021)
chr7 (285-350)||(17780078-17780143)
chr7 (286-350)||(4017789-4017853)
chr7 (287-345)||(5938477-5938535)
chr7 (291-349)||(12278836-12278894)
chr7 (304-350)||(38134419-38134465)
chr7 (230-267)||(1433542-1433579)
chr7 (309-350)||(1885573-1885614)
chr7 (229-258)||(14729795-14729824)
chr7 (232-273)||(18035806-18035847)
chr7 (294-347)||(22683758-22683811)
chr7 (309-342)||(24339650-24339683)
chr7 (309-342)||(25481910-25481943)
chr7 (309-342)||(26033479-26033512)
chr7 (232-269)||(32287404-32287441)
chr7 (310-342)||(8234154-8234186)
chr7 (309-349)||(18233616-18233656)
chr7 (304-344)||(30606077-30606117)
chr7 (228-268)||(40131936-40131976)
[»] chr2 (27 HSPs)
chr2 (271-350)||(11307984-11308062)
chr2 (271-350)||(23354632-23354711)
chr2 (274-350)||(25544481-25544557)
chr2 (274-350)||(30563409-30563485)
chr2 (289-350)||(10535757-10535818)
chr2 (287-344)||(24011042-24011099)
chr2 (291-350)||(12748684-12748743)
chr2 (271-350)||(23354975-23355054)
chr2 (309-342)||(12668441-12668474)
chr2 (309-350)||(30404868-30404909)
chr2 (286-350)||(19573978-19574042)
chr2 (286-350)||(37986779-37986843)
chr2 (315-350)||(25317137-25317172)
chr2 (297-344)||(34006997-34007044)
chr2 (313-352)||(42418867-42418906)
chr2 (231-269)||(18840953-18840991)
chr2 (304-349)||(18570973-18571018)
chr2 (309-342)||(21374717-21374750)
chr2 (309-342)||(28677917-28677950)
chr2 (309-350)||(30298465-30298506)
chr2 (309-342)||(30335425-30335458)
chr2 (309-342)||(30717548-30717581)
chr2 (309-350)||(40681982-40682023)
chr2 (227-268)||(42511318-42511359)
chr2 (285-344)||(6698453-6698513)
chr2 (315-343)||(24894492-24894520)
chr2 (230-297)||(44635546-44635613)
[»] chr6 (25 HSPs)
chr6 (287-350)||(34446565-34446628)
chr6 (230-342)||(30781232-30781345)
chr6 (251-350)||(34229454-34229548)
chr6 (288-350)||(6389743-6389805)
chr6 (293-350)||(12235521-12235578)
chr6 (291-350)||(12086345-12086404)
chr6 (309-350)||(28715295-28715336)
chr6 (281-349)||(19602171-19602239)
chr6 (286-349)||(17168458-17168521)
chr6 (309-344)||(17168900-17168935)
chr6 (286-352)||(26247424-26247490)
chr6 (231-269)||(34595215-34595253)
chr6 (309-342)||(5970126-5970159)
chr6 (309-342)||(7977848-7977881)
chr6 (309-342)||(10770692-10770725)
chr6 (309-342)||(12696332-12696365)
chr6 (309-342)||(16766705-16766738)
chr6 (309-342)||(31384928-31384961)
chr6 (232-269)||(31959231-31959268)
chr6 (309-342)||(34595142-34595175)
chr6 (231-275)||(4878017-4878061)
chr6 (231-275)||(6389807-6389851)
chr6 (309-349)||(7569186-7569226)
chr6 (309-341)||(16388251-16388283)
chr6 (288-344)||(34541747-34541803)
[»] chr3 (37 HSPs)
chr3 (286-349)||(12704652-12704715)
chr3 (271-350)||(52369775-52369854)
chr3 (291-350)||(15864833-15864892)
chr3 (296-344)||(21149073-21149121)
chr3 (291-350)||(24205041-24205100)
chr3 (287-350)||(25074789-25074852)
chr3 (293-343)||(3730167-3730217)
chr3 (309-350)||(16789668-16789709)
chr3 (288-349)||(21211289-21211350)
chr3 (286-343)||(25892467-25892524)
chr3 (286-343)||(41319305-41319362)
chr3 (309-341)||(20503474-20503506)
chr3 (304-344)||(20691325-20691365)
chr3 (294-350)||(34189427-34189483)
chr3 (232-342)||(34910325-34910435)
chr3 (286-349)||(25326427-25326490)
chr3 (310-349)||(25652050-25652089)
chr3 (296-342)||(1830351-1830397)
chr3 (315-349)||(11093571-11093605)
chr3 (304-350)||(21861569-21861615)
chr3 (291-345)||(25365467-25365521)
chr3 (309-347)||(25948905-25948943)
chr3 (308-342)||(51206370-51206404)
chr3 (309-342)||(3164043-3164076)
chr3 (309-342)||(4987309-4987342)
chr3 (309-342)||(7928458-7928491)
chr3 (309-342)||(10954960-10954993)
chr3 (309-342)||(14979189-14979222)
chr3 (309-342)||(26508118-26508151)
chr3 (309-342)||(28918009-28918042)
chr3 (309-350)||(49651804-49651845)
chr3 (233-269)||(4987222-4987258)
chr3 (229-269)||(8903516-8903556)
chr3 (286-338)||(21367289-21367341)
chr3 (231-267)||(21861658-21861694)
chr3 (308-352)||(33548840-33548884)
chr3 (286-342)||(34307775-34307831)
[»] chr1 (23 HSPs)
chr1 (286-352)||(42004942-42005008)
chr1 (289-350)||(21145466-21145528)
chr1 (293-349)||(22794080-22794136)
chr1 (286-349)||(6936395-6936458)
chr1 (286-350)||(40747768-40747832)
chr1 (231-291)||(22881567-22881627)
chr1 (294-350)||(48415728-48415785)
chr1 (309-349)||(42325561-42325601)
chr1 (229-273)||(48450548-48450592)
chr1 (231-269)||(9828136-9828174)
chr1 (304-342)||(30847733-30847771)
chr1 (309-342)||(113307-113340)
chr1 (309-342)||(398783-398816)
chr1 (309-342)||(1486727-1486760)
chr1 (309-342)||(6612189-6612222)
chr1 (309-342)||(17754319-17754352)
chr1 (309-342)||(18190126-18190159)
chr1 (309-342)||(24577204-24577237)
chr1 (309-342)||(40258951-40258984)
chr1 (231-267)||(7918154-7918190)
chr1 (309-345)||(11571590-11571626)
chr1 (309-341)||(18337338-18337370)
chr1 (231-275)||(34741921-34741965)
[»] chr8 (27 HSPs)
chr8 (275-350)||(44067516-44067590)
chr8 (288-344)||(8017492-8017548)
chr8 (275-343)||(13845241-13845309)
chr8 (291-347)||(35431140-35431196)
chr8 (287-343)||(40063958-40064014)
chr8 (291-350)||(1676712-1676771)
chr8 (271-350)||(13009473-13009552)
chr8 (275-349)||(16869699-16869773)
chr8 (313-350)||(30068050-30068087)
chr8 (287-343)||(14513170-14513226)
chr8 (229-269)||(22652068-22652108)
chr8 (291-343)||(39820436-39820488)
chr8 (299-342)||(18646180-18646223)
chr8 (293-348)||(28883880-28883935)
chr8 (231-269)||(29510233-29510271)
chr8 (229-275)||(39820503-39820549)
chr8 (231-269)||(40064043-40064081)
chr8 (309-342)||(4948660-4948693)
chr8 (234-267)||(13203700-13203733)
chr8 (309-342)||(25566849-25566882)
chr8 (309-350)||(28642408-28642449)
chr8 (309-342)||(41831958-41831991)
chr8 (294-350)||(3658147-3658203)
chr8 (271-343)||(3911117-3911189)
chr8 (310-342)||(6211456-6211488)
chr8 (229-269)||(24413497-24413537)
chr8 (286-350)||(26915235-26915299)
[»] chr5 (29 HSPs)
chr5 (286-350)||(43554521-43554585)
chr5 (309-355)||(18162050-18162096)
chr5 (309-350)||(4344742-4344783)
chr5 (287-344)||(5467974-5468031)
chr5 (273-350)||(18607079-18607156)
chr5 (309-349)||(24906319-24906359)
chr5 (287-350)||(39695995-39696058)
chr5 (286-336)||(26205755-26205805)
chr5 (309-350)||(13287417-13287458)
chr5 (293-342)||(31264446-31264495)
chr5 (309-350)||(38749581-38749622)
chr5 (231-275)||(17123122-17123166)
chr5 (303-350)||(42469221-42469268)
chr5 (304-350)||(2577193-2577239)
chr5 (291-349)||(7997166-7997224)
chr5 (293-347)||(18586291-18586344)
chr5 (309-342)||(6247630-6247663)
chr5 (309-350)||(6471907-6471948)
chr5 (229-258)||(17593661-17593690)
chr5 (293-350)||(18288053-18288110)
chr5 (309-342)||(21191074-21191107)
chr5 (309-342)||(21576763-21576796)
chr5 (286-343)||(25863211-25863268)
chr5 (309-342)||(39698549-39698582)
chr5 (309-342)||(43001808-43001841)
chr5 (232-268)||(3966596-3966632)
chr5 (231-291)||(6247670-6247729)
chr5 (290-342)||(21137697-21137749)
chr5 (310-350)||(28296328-28296368)
[»] scaffold0199 (1 HSPs)
scaffold0199 (291-350)||(1949-2008)
[»] scaffold0154 (1 HSPs)
scaffold0154 (230-269)||(13505-13544)
[»] scaffold0066 (1 HSPs)
scaffold0066 (287-342)||(33360-33414)
[»] scaffold0007 (1 HSPs)
scaffold0007 (275-350)||(225253-225327)
[»] scaffold1528 (1 HSPs)
scaffold1528 (309-342)||(1043-1076)
[»] scaffold0652 (1 HSPs)
scaffold0652 (232-269)||(403-440)
[»] scaffold0361 (1 HSPs)
scaffold0361 (309-342)||(14538-14571)
[»] scaffold0223 (1 HSPs)
scaffold0223 (309-342)||(20180-20213)
[»] scaffold0136 (1 HSPs)
scaffold0136 (309-350)||(3867-3908)
[»] scaffold0103 (1 HSPs)
scaffold0103 (309-342)||(51819-51852)
[»] scaffold0050 (1 HSPs)
scaffold0050 (309-342)||(70286-70319)
[»] scaffold0027 (1 HSPs)
scaffold0027 (309-342)||(46690-46723)


Alignment Details
Target: scaffold0598 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 65 - 347
Target Start/End: Original strand, 7816 - 8109
Alignment:
Q  65 gggtatctttgcgcgttgtccggagtattttccggtggtttttcattgcttgtagacaatgtcatgccatggaaccgtccaagacaaacaataaagggat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7816 gggtatctttgcgcgttgtccggagtattttccggtggtttttcattgcttgtagacaatgtcatgccatggaaccgtccaagacaaacaataaagggat 7915  T
Q  165 aaaaattaaaaagagtaattaattgaatgct-----------tgctttattcttgaactttgctggtgtcaccaaagctatgaagtacggacactcctcg 253  Q
    |||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||||| || ||||||||||||||| ||||| |||     
T  7916 aaaaattaaaaagagtaattaattgaatgcttgttttaccggtgctttatccttgaactttgctggtgtctccgaagctatgaagtacgcacacttctcc 8015  T
Q  254 gattagatgtgtcccgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 347  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  8016 gattagatgtgtcccgtgtcgatgtccgacaccgaaaccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgt 8109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 20743255 - 20743337
Alignment:
Q  268 cgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  20743255 cgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 20743337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 31243529 - 31243600
Alignment:
Q  272 tcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    ||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||    
T  31243529 tcggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 24343570 - 24343507
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| |||||||||||||||||||    
T  24343570 gacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtc 24343507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 3144648 - 3144710
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||| | ||||||||||||||||    
T  3144648 gacaccgacacgacacctatgattacactaaattatatcattttctgaaattattatccgtgt 3144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 32910592 - 32910551
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  32910592 ttacactgaattatgtcattttctcaaattattatccgtgtc 32910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 34515881 - 34515933
Alignment:
Q  298 gacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| |||||||||||||||||||||||||||| |  ||||||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtc 34515933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 37203305 - 37203262
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  37203305 ttacactaaattatgtcattttttcaaattattagccgtgtctg 37203262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 21945544 - 21945511
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    ||||||||||||||||||||||||||||||||||    
T  21945544 ttacactgaattatgtcattttttcaaattatta 21945511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 30520433 - 30520490
Alignment:
Q  288 acaccgacacgacatctatgtttacactgaattatgtca-ttttttcaaattattatc 344  Q
    |||| ||||| ||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  30520433 acactgacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 53968606 - 53968553
Alignment:
Q  290 accgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    |||||||||||||||||| |  ||||||||||||||||||| | ||||||||||    
T  53968606 accgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 7012145 - 7012066
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacac-gacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||| ||||||  |||| || | ||||| | |||||||||||||||||||| ||||||||||||| |||||    
T  7012145 gtcggtgtccgacaccgacaca-acaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtc 7012066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 18513254 - 18513302
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||||    
T  18513254 tatgattacattgaattatgtcattttctcaaattattatcggtgtctg 18513302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 19230241 - 19230277
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcc 267  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19230241 ctatgaagtacggacactcttcggattagatgtgtcc 19230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 29205485 - 29205445
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  29205485 ttacactgaattatgtgattttttcaaattattagccgtgt 29205445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 43299984 - 43300032
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||| ||||| |||||||||| ||||| |||||||||||||||||||||    
T  43299984 tatgattacattgaattatgtaattttctcaaattattatccgtgtctg 43300032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 43300662 - 43300614
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||| ||||| |||||||||| ||||| |||||||||||||||||||||    
T  43300662 tatgattacattgaattatgtaattttctcaaattattatccgtgtctg 43300614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 6274023 - 6273944
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| |||| |||| |||||||||||||||  ||||  ||||||| |||||| ||||||| |||||||||| || |||||    
T  6274023 gtcgatgtctgacaccgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtc 6273944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 16402211 - 16402270
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||||  |||||||| || |||| ||||| |||||||||||||||||||    
T  16402211 ccgacacgacagctataattacactgtatcatgttattttctcaaattattatccgtgtc 16402270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 35239229 - 35239178
Alignment:
Q  240 acggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacac 291  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||| ||||||    
T  35239229 acggacactcctcggattagacgtgtccagggtcagtgtccgacaccgacac 35239178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 5654604 - 5654650
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||    
T  5654604 tatgattacattgaattatgtcattttctcaaattattatcagtgtc 5654650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 30299048 - 30299010
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30299048 ctatgaagcacggacactcctcggattagacgtgtcccg 30299010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 30327916 - 30327878
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30327916 ctatgaagcacggacactcctcggattagacgtgtcccg 30327878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 40784072 - 40784034
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccg 40784034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 50848321 - 50848355
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattat 343  Q
    |||||||||||||| ||||||||||||||||||||    
T  50848321 ttacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 53381530 - 53381568
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccg 53381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 11596370 - 11596403
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  11596370 ttacactgaattatgtgattttttcaaattatta 11596403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 28964266 - 28964299
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  28964266 ttacactgaattatgtgattttttcaaattatta 28964299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 43188647 - 43188610
Alignment:
Q  315 tgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  43188647 tgaattatgtcattttctcaaattattatcagtgtctg 43188610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 54580041 - 54580074
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  54580041 ttacactgaattatgtgattttttcaaattatta 54580074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 824212 - 824252
Alignment:
Q  227 aaagctatgaagtacggacactcctcggattagatgtgtcc 267  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  824212 aaagctatgaagcacggacagtcctcggattagacgtgtcc 824252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 10546194 - 10546154
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 29812595 - 29812716
Alignment:
Q  228 aagctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgt------ccgacatcgacaccgacacgacatctatgtttacactgaatta 321  Q
    ||||||||||| ||||||||| ||||||||||  |||||||||||||||||      |||||| |||||||||||||||| ||||| ||||||| |||||    
T  29812595 aagctatgaagcacggacacttctcggattaggcgtgtcccgtgtcggtgtccgacaccgacaccgacaccgacacgacacctatgattacactaaatta 29812694  T
Q  322 tgtcattttttcaaattattat 343  Q
    | ||||||| ||||||||||||    
T  29812695 tatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 23930283 - 23930219
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  23930283 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtc 23930219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 13427632 - 13427576
Alignment:
Q  294 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||    
T  13427632 acacgacatctatgattatactaaattatgtcattttttcaaattattttccgtgtc 13427576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 43250057 - 43249993
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||||||  |||  |||||||| ||||||||||||| |||||||||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtc 43249993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 23751959 - 23751900
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||    
T  23751959 ccgacacgacacctatgattacactaaattatatcattttatcaaattattatccgtgtc 23751900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 10230068 - 10230126
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||||| |||||||||||||  |||||||||||||||||||||  |||||||||||||    
T  10230068 cgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattatc 10230126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 7133273 - 7133337
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||  || ||||| |||||||||||||||||||||| ||||||||| ||| |||||    
T  7133273 cgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtc 7133337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 38804550 - 38804614
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||| |||||||| ||||| |||| ||| ||||||||||||| | |||||||||||||||||    
T  38804550 cgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtc 38804614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 44021021 - 44020973
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  44021021 tatggttacattgaattatgtaattttttcaaattattatccgtgtctg 44020973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 17780078 - 17780143
Alignment:
Q  285 tcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||||||| ||||  |||||  ||||||||||||||| | |||||||||||| ||||    
T  17780078 tcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattatccatgtc 17780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 4017789 - 4017853
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||| ||||||||  |||| ||||||| |||||| || |||| |||||||||||||||||||    
T  4017789 cgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtc 4017853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 5938535 - 5938477
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatcc 345  Q
    ||||||||||| ||| ||||  ||| |||||||||||| ||||| ||||||||||||||    
T  5938535 gacaccgacacaacacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 12278894 - 12278836
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||  |||  |||||||||||||||||||||| | ||||||||||| ||||    
T  12278894 ccgacacgacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 38134419 - 38134465
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| ||||| |||||||||||||||| ||||||||||||| |||||    
T  38134419 tatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 1433579 - 1433542
Alignment:
Q  230 gctatgaagtacggacactcctcggattagatgtgtcc 267  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  1433579 gctatgaagcacggacactcctcggattagacgtgtcc 1433542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 1885614 - 1885573
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  1885614 ttacattgaattatgtcattttttcaaaattttatccgtgtc 1885573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 14729824 - 14729795
Alignment:
Q  229 agctatgaagtacggacactcctcggatta 258  Q
    ||||||||||||||||||||||||||||||    
T  14729824 agctatgaagtacggacactcctcggatta 14729795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 18035806 - 18035847
Alignment:
Q  232 tatgaagtacggacactcctcggattagatgtgtcccgtgtc 273  Q
    ||||||| ||||||||||||||||||||| |||| |||||||    
T  18035806 tatgaagcacggacactcctcggattagacgtgttccgtgtc 18035847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 22683758 - 22683811
Alignment:
Q  294 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 347  Q
    |||||||| ||||| || ||||||||||| |||| || ||||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgt 22683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 24339683 - 24339650
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  24339683 ttacactgaattatgtgattttttcaaattatta 24339650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 25481943 - 25481910
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  25481943 ttacactgaattatgtgattttttcaaattatta 25481910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 26033479 - 26033512
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  26033479 ttacactgaattatgtgattttttcaaattatta 26033512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 32287404 - 32287441
Alignment:
Q  232 tatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccg 32287441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 342
Target Start/End: Complemental strand, 8234186 - 8234154
Alignment:
Q  310 tacactgaattatgtcattttttcaaattatta 342  Q
    ||||||||||||||| |||||||||||||||||    
T  8234186 tacactgaattatgttattttttcaaattatta 8234154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 18233616 - 18233656
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||||||||| |||||||| |||| ||||    
T  18233616 ttacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 30606077 - 30606117
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    |||| ||||| |||||||||||||||||| |||||||||||    
T  30606077 tatggttacattgaattatgtcattttttgaaattattatc 30606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 40131936 - 40131976
Alignment:
Q  228 aagctatgaagtacggacactcctcggattagatgtgtccc 268  Q
    ||||||||||| || |||||||||||||||||| |||||||    
T  40131936 aagctatgaagcacagacactcctcggattagacgtgtccc 40131976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 11307984 - 11308062
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  11307984 gtcggtgtccaacaccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtc 11308062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 23354632 - 23354711
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||| |||||    
T  23354632 gtcggtgtccgaccccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtc 23354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 25544557 - 25544481
Alignment:
Q  274 ggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||| ||||  ||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||| ||||||    
T  25544557 ggtgtctgacactgacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtc 25544481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 30563485 - 30563409
Alignment:
Q  274 ggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||  ||||||||||| ||| ||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  30563485 ggtgtccgacactgacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatccgtgtc 30563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 10535757 - 10535818
Alignment:
Q  289 caccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| ||||||||  |||| |||||||||||||||||||||| ||||||||||||| |||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 24011099 - 24011042
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||||||| ||||| ||||| ||||||| |||||||||||||| |||||||||||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 12748743 - 12748684
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||| ||| ||||| |||||||||| ||||||||||| |||||||||||||| ||||    
T  12748743 ccgacacaacacctatgattacactgaactatgtcattttctcaaattattatccatgtc 12748684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 23354975 - 23355054
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||| ||  ||||||||||| |||| ||||| || |||| |||||| ||||||| ||||||||||||| |||||    
T  23354975 gtcggtgtccaaccccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtc 23355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 12668441 - 12668474
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    ||||||||||||||||||||||||||||||||||    
T  12668441 ttacactgaattatgtcattttttcaaattatta 12668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 30404868 - 30404909
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  30404868 ttacactgaattatgtgattttttcaaattattaaccgtgtc 30404909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 19574042 - 19573978
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||| || ||||  |||||||||||||||| ||||| | ||||||||||| |||||    
T  19574042 cgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtc 19573978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 37986843 - 37986779
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||| |||||| | ||||| ||||||| || ||| ||||||||||||||||||||| |||||    
T  37986843 cgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtc 37986779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 25317172 - 25317137
Alignment:
Q  315 tgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||||||||||||| |||||    
T  25317172 tgaattatgtcattttttcaaattattatcggtgtc 25317137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 34006997 - 34007044
Alignment:
Q  297 cgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 42418906 - 42418867
Alignment:
Q  313 actgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  42418906 actgaattatgtcattttttcaaatttttatacgtgtctg 42418867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 18840953 - 18840991
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccg 18840991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 18571018 - 18570973
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  18571018 tatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 21374717 - 21374750
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  21374717 ttacactgaattatgtaattttttcaaattatta 21374750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 28677950 - 28677917
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  28677950 ttacactgaattatgtgattttttcaaattatta 28677917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 30298465 - 30298506
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||||| | ||||||||||| |||||    
T  30298465 ttacactgaattatgtcattttattaaattattatcggtgtc 30298506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 30335458 - 30335425
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    ||||||| ||||||||||||||||||||||||||    
T  30335458 ttacactaaattatgtcattttttcaaattatta 30335425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 30717548 - 30717581
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  30717548 ttacactgaattatgtgattttttcaaattatta 30717581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 40682023 - 40681982
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  40682023 ttacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 42511318 - 42511359
Alignment:
Q  227 aaagctatgaagtacggacactcctcggattagatgtgtccc 268  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  42511318 aaagctatgaagcacggacactcctcggattagccgtgtccc 42511359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 6698453 - 6698513
Alignment:
Q  285 tcgacaccgacacgacatctatgtttacactgaattatgtca-ttttttcaaattattatc 344  Q
    |||||||| | ||||||  |||| |||||||||||||| ||| ||||||||||||||||||    
T  6698453 tcgacaccaatacgacacgtatgattacactgaattatttcacttttttcaaattattatc 6698513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 343
Target Start/End: Complemental strand, 24894520 - 24894492
Alignment:
Q  315 tgaattatgtcattttttcaaattattat 343  Q
    |||||||||||||||||||||||||||||    
T  24894520 tgaattatgtcattttttcaaattattat 24894492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 297
Target Start/End: Complemental strand, 44635613 - 44635546
Alignment:
Q  230 gctatgaagtacggacactcctcggattagatgtgtc-ccgtgtcggtgtccgacatcgacaccgacac 297  Q
    ||||||||| ||||||||||||| ||||||  ||||| | ||||| |||||||||| ||||||||||||    
T  44635613 gctatgaagcacggacactcctcagattaggcgtgtctcggtgtc-gtgtccgacaccgacaccgacac 44635546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 34446628 - 34446565
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||    
T  34446628 gacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 34446565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 30781232 - 30781345
Alignment:
Q  230 gctatgaagtacggacactcctcggattagatgtgtcccg-tgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcatt 328  Q
    ||||||||| ||| |||||||||||||||  ||||||||| |||| ||||| || || |||||||||| |||| ||||| ||||| | ||||||||||||    
T  30781232 gctatgaagcacgaacactcctcggattaagtgtgtcccggtgtcagtgtctgatattgacaccgacatgacacctatgattacaattaattatgtcatt 30781331  T
Q  329 ttttcaaattatta 342  Q
    || |||||||||||    
T  30781332 ttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 350
Target Start/End: Complemental strand, 34229548 - 34229454
Alignment:
Q  251 tcggattagatgtgtcccgtgtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||     |||||||||| ||||||| ||||| |||||||  ||||||||| || |||||||||||||||||||||||| ||||    
T  34229548 tcggattagatgtgtcccg-----gtgtccgacaccgacaccaacacggcatctattattacactgacttgtgtcattttttcaaattattatccatgtc 34229454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 6389805 - 6389743
Alignment:
Q  288 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtc 6389743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 12235521 - 12235578
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtc 12235578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 12086345 - 12086404
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||||| ||| |||||||||||||||| | |||||||||||||||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtc 12086404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 28715336 - 28715295
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  28715336 ttacactgaattatgtcattttttcaaattattagccgtgtc 28715295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 19602171 - 19602239
Alignment:
Q  281 gacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    ||||| ||||||||||| | | ||||| |||||||||||||| ||||||| ||||||||||||| ||||    
T  19602171 gacatggacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 17168458 - 17168521
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||| ||||  ||||||| |||||| ||||||| ||||||||||||| ||||    
T  17168458 cgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgt 17168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 344
Target Start/End: Complemental strand, 17168935 - 17168900
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17168935 ttacattgaattatgtcattttttcaaattattatc 17168900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 26247490 - 26247424
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||||||||||||| | ||||| ||| ||| || ||||||||||| | |||||||||||||| ||||    
T  26247490 cgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgtatctg 26247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 34595253 - 34595215
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccg 34595215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 5970126 - 5970159
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  5970126 ttacactgaattatgtgattttttcaaattatta 5970159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 7977848 - 7977881
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  7977848 ttacactgaattatgtaattttttcaaattatta 7977881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 10770692 - 10770725
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  10770692 ttacactgaattatgtgattttttcaaattatta 10770725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 12696365 - 12696332
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  12696365 ttacactgaattatgtaattttttcaaattatta 12696332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 16766738 - 16766705
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  16766738 ttacactgaattatgtgattttttcaaattatta 16766705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 31384961 - 31384928
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  31384961 ttacactgaattatgtgattttttcaaattatta 31384928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 31959268 - 31959231
Alignment:
Q  232 tatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccg 31959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 34595175 - 34595142
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  34595175 ttacactgaattatgtgattttttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 4878061 - 4878017
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 275  Q
    |||||||| ||||||||||||||||||||  |||||| |||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgtcctgtgtcgg 4878017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 6389851 - 6389807
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 275  Q
    |||||||| ||||||||| ||||||||||  ||||||||||||||    
T  6389851 ctatgaagcacggacacttctcggattaggagtgtcccgtgtcgg 6389807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 7569186 - 7569226
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  7569186 ttacactgaattatgtaattttctcaaattattatctgtgt 7569226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 16388251 - 16388283
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatt 341  Q
    |||||||||||||||| ||||||||||||||||    
T  16388251 ttacactgaattatgtgattttttcaaattatt 16388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 34541747 - 34541803
Alignment:
Q  288 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||||||| ||||  |||| ||||| |||||| |||||||||||| ||||||||||    
T  34541747 acaccgacatgacacatatgattacattgaattttgtcattttttctaattattatc 34541803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 12704652 - 12704715
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  12704652 cgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 52369854 - 52369775
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||| | |||||||||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||| ||||    
T  52369854 gtcggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgtc 52369775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 15864892 - 15864833
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  15864892 ccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtc 15864833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 21149121 - 21149073
Alignment:
Q  296 acgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||    
T  21149121 acgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 24205041 - 24205100
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||  |||  |||||||| ||||||||||||| |||||||||||||||||||    
T  24205041 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtc 24205100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 25074852 - 25074789
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||  ||||| ||||||| |||||||||||||| ||||||||||||| |||||    
T  25074852 gacaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatcggtgtc 25074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    ||||||||| ||||| |||||||||||||||||||| | ||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 16789668 - 16789709
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtc 16789709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 21211350 - 21211289
Alignment:
Q  288 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||| | ||  |||||||||| ||||| ||||| ||||||||||||||||||    
T  21211350 acaccgacacgacacccataattacactgaactatgtaattttctcaaattattatccgtgt 21211289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 25892524 - 25892467
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    |||||| ||||||||| ||||| |||||||||||||| ||||||| | ||||||||||    
T  25892524 cgacactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 41319305 - 41319362
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    ||||||||||||||||  ||   ||||| |||||||||||||||||||||||||||||    
T  41319305 cgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattat 41319362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 20503506 - 20503474
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatt 341  Q
    |||||||||||||||||||||||||||||||||    
T  20503506 ttacactgaattatgtcattttttcaaattatt 20503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 20691365 - 20691325
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 34189483 - 34189427
Alignment:
Q  294 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||| ||| | |||||||||| ||||||||||| ||||||||||||| |||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtc 34189427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 342
Target Start/End: Complemental strand, 34910435 - 34910325
Alignment:
Q  232 tatgaagtacggacactcctcggattagatgtgtcccg-tgtcggtgtccgacatcgacaccgacac-gacatctatgtttacactgaattatgtcattt 329  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||  ||||||||| ||| || ||||| |||   | |  |||||||||||||||| ||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccggtgtca-tgtccgacaccgatac-gacaccgactcttgtaattacactgaattatgtgattt 34910338  T
Q  330 tttcaaattatta 342  Q
    |||||||||||||    
T  34910337 tttcaaattatta 34910325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 25326490 - 25326427
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    ||||||| |||||||||||||  ||||||| |||||| | ||||||| ||||||||||| ||||    
T  25326490 cgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 25652050 - 25652089
Alignment:
Q  310 tacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  25652050 tacactgaattatatcattttctcaaattattatccgtgt 25652089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  296 acgacatctatgtttacactgaattatgtcattttttcaaattatta 342  Q
    |||||| ||||| |||||||||||||||||||||| | |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 11093605 - 11093571
Alignment:
Q  315 tgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||||||||||||||||| ||||    
T  11093605 tgaattatgtcattttttcaaattattatcagtgt 11093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 21861615 - 21861569
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| ||||||||||||||||||||||| |||||| ||||| |||||    
T  21861615 tatgattacactgaattatgtcatttttccaaattgttatctgtgtc 21861569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 25365521 - 25365467
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatcc 345  Q
    |||||||||||  |||| |||||| |||||||||||| || ||||||||||||||    
T  25365521 ccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 25948905 - 25948943
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgt 347  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  25948905 ttacactgaattatgtgattttttcaaattattagccgt 25948943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 51206370 - 51206404
Alignment:
Q  308 tttacactgaattatgtcattttttcaaattatta 342  Q
    ||||||||||||||||| |||||||||||||||||    
T  51206370 tttacactgaattatgtgattttttcaaattatta 51206404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 3164043 - 3164076
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  3164043 ttacactgaattatgtgattttttcaaattatta 3164076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 4987309 - 4987342
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  4987309 ttacactgaattatgtgattttttcaaattatta 4987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 7928491 - 7928458
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  7928491 ttacactgaattatgtgattttttcaaattatta 7928458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 10954993 - 10954960
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  10954993 ttacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 14979222 - 14979189
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  14979222 ttacactgaattatgtgattttttcaaattatta 14979189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 26508151 - 26508118
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  26508151 ttacactgaattatgtgattttttcaaattatta 26508118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 28918042 - 28918009
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  28918042 ttacactgaattatgtgattttttcaaattatta 28918009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 49651804 - 49651845
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||| |||||||||| ||||||||||||||||| |||||||    
T  49651804 ttacagtgaattatgtgattttttcaaattattagccgtgtc 49651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 4987222 - 4987258
Alignment:
Q  233 atgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||||||||||||||||||||||  ||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccg 4987258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 8903556 - 8903516
Alignment:
Q  229 agctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||||| ||| |||||||||||||||| |||||||||    
T  8903556 agctatgaagcacgaacactcctcggattaggtgtgtcccg 8903516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 21367341 - 21367289
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaatt 338  Q
    |||||||||||| ||| | ||| ||||||| |||||||||||||| |||||||    
T  21367341 cgacaccgacacaacaaccatgattacactaaattatgtcattttctcaaatt 21367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcc 267  Q
    |||||||| |||||||||||||||||||| |||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 33548884 - 33548840
Alignment:
Q  308 tttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    ||||| |||||||| |||||||| ||||||||||||| |||||||    
T  33548884 tttactctgaattaagtcattttctcaaattattatcggtgtctg 33548840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 34307775 - 34307831
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 342  Q
    ||||||||||||||||  |||  |||||||||| ||||| ||||| |||||||||||    
T  34307775 cgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 42004942 - 42005008
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtctg 352  Q
    |||||||||||| ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  42004942 cgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgtgtctg 42005008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 21145528 - 21145466
Alignment:
Q  289 caccgacacgacatctatgtttacactgaattatgtcatt-ttttcaaattattatccgtgtc 350  Q
    ||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  21145528 caccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgtc 21145466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 22794080 - 22794136
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    ||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgt 22794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 6936395 - 6936458
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||| ||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||    
T  6936395 cgacacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgt 6936458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 40747768 - 40747832
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||| ||| |||| ||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  40747768 cgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtc 40747832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 22881567 - 22881627
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtccc-gtgtcggtgtccgacatcgacac 291  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  22881567 ctatgaagcacggacactcctcggattagacgtgtcccggtgtc-gtgtccgacaccgacac 22881627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 48415728 - 48415785
Alignment:
Q  294 acacgacatctatgtttacactgaattatgtca-ttttttcaaattattatccgtgtc 350  Q
    |||||||||||||| ||||||| |||||| ||| |||||| |||||||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtc 48415785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 42325601 - 42325561
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 48450548 - 48450592
Alignment:
Q  229 agctatgaagtacggacactcctcggattagatgtgtcccgtgtc 273  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||    
T  48450548 agctatgaagcacggacactcctcggattagacgtgtcctgtgtc 48450592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 9828174 - 9828136
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccg 9828136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 30847733 - 30847771
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattatta 342  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  30847733 tatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 113340 - 113307
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  113340 ttacactgaattatgtgattttttcaaattatta 113307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 398783 - 398816
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  398783 ttacactgaattatgtgattttttcaaattatta 398816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 1486727 - 1486760
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  1486727 ttacactgaattatgtgattttttcaaattatta 1486760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 6612189 - 6612222
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  6612189 ttacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 17754352 - 17754319
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  17754352 ttacactgaattatgtaattttttcaaattatta 17754319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 18190126 - 18190159
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  18190126 ttacactgaattatgtaattttttcaaattatta 18190159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 24577204 - 24577237
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  24577204 ttacactgaattatgtgattttttcaaattatta 24577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 40258951 - 40258984
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  40258951 ttacactgaattatgtgattttttcaaattatta 40258984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 7918154 - 7918190
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcc 267  Q
    |||||||| |||||||||||||||||||| |||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 11571626 - 11571590
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatcc 345  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  11571626 ttacattgaattatgtcattttctcaaattattatcc 11571590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 18337370 - 18337338
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatt 341  Q
    |||||||||||||||| ||||||||||||||||    
T  18337370 ttacactgaattatgtgattttttcaaattatt 18337338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 34741965 - 34741921
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 275  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtgtcccgtgtcgg 34741921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 44067590 - 44067516
Alignment:
Q  275 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||| ||||||||||||||||  |||  |||||||| ||||||||||||| |||||||||||||||||||    
T  44067590 gtgtccgaca-cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtc 44067516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 8017548 - 8017492
Alignment:
Q  288 acaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||    
T  8017548 acactgacacgacatctatgattacactcaattatgtcattttttcatattattatc 8017492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 13845309 - 13845241
Alignment:
Q  275 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    |||||||||| |||||| ||||||||| ||||| |||| || |||||| ||||||| ||||||||||||    
T  13845309 gtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 35431140 - 35431196
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 347  Q
    ||||||||||| ||||| ||||||| || ||||||||||| ||||||||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgt 35431196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 40064014 - 40063958
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 1676771 - 1676712
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||||| ||||||| || |||||||||||  ||||||||||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1676712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 13009473 - 13009552
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||| |||| | ||||||||||||||  |||| ||||||| |||||| |  |||| |||||||||||||||||||    
T  13009473 gtcggtgtctgacacctacaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtc 13009552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 349
Target Start/End: Original strand, 16869699 - 16869773
Alignment:
Q  275 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||| ||||||| |||||||| | ||| ||| | |||||||||||||||| | |||||||| |||||||    
T  16869699 gtgtccgacaccgacaccaacacgacaccaatgattatagtgaattatgtcattttcttaaattattttccgtgt 16869773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 30068050 - 30068087
Alignment:
Q  313 actgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30068050 actgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 14513170 - 14513226
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    ||||||||||| | ||||||| |||| ||||||||||| ||||| ||||||||||||    
T  14513170 gacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattat 14513226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 22652108 - 22652068
Alignment:
Q  229 agctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  22652108 agctatgaagcacggacactcctcggattagacgtgtcccg 22652068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 39820488 - 39820436
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    ||||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||    
T  39820488 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 18646223 - 18646180
Alignment:
Q  299 acatctatgtttacactgaattatgtcattttttcaaattatta 342  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||    
T  18646223 acatatatgattacactgaatcatgtcattttttcaaattatta 18646180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 28883880 - 28883935
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtg 348  Q
    |||| |||| ||||| || ||||||||||||||||||| |||||||||||| ||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattattcgtg 28883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 29510233 - 29510271
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccg 29510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 39820549 - 39820503
Alignment:
Q  229 agctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 275  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||||    
T  39820549 agctatgaagcacggacacttctcggattaggcgtgtcccgtgtcgg 39820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 40064081 - 40064043
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  40064081 ctatgtagcacggacactcctcggattagatgtgtcccg 40064043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 4948693 - 4948660
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  4948693 ttacactgaattatgtgattttttcaaattatta 4948660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 13203733 - 13203700
Alignment:
Q  234 tgaagtacggacactcctcggattagatgtgtcc 267  Q
    ||||| ||||||||||||||||||||||||||||    
T  13203733 tgaagcacggacactcctcggattagatgtgtcc 13203700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 25566882 - 25566849
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  25566882 ttacactgaattatgtgattttttcaaattatta 25566849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 28642449 - 28642408
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||| | ||||||||||||||| |||||||    
T  28642449 ttacactgaattatgtaaatttttcaaattattaaccgtgtc 28642408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 41831958 - 41831991
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  41831958 ttacactgaattatgtgattttttcaaattatta 41831991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 3658203 - 3658147
Alignment:
Q  294 acacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||| ||||| |||||||||| ||  | ||||| |||||||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgtgtc 3658147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 3911189 - 3911117
Alignment:
Q  271 gtcggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    |||||||||||| | ||||||| ||||||||  |||| || ||||||||||||| ||||| | |||| |||||    
T  3911189 gtcggtgtccgataccgacaccaacacgacacttatgatttcactgaattatgtgattttattaaatgattat 3911117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 6211456 - 6211488
Alignment:
Q  310 tacactgaattatgtcattttttcaaattatta 342  Q
    |||| ||||||||||||||||||||||||||||    
T  6211456 tacattgaattatgtcattttttcaaattatta 6211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 24413497 - 24413537
Alignment:
Q  229 agctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||||| ||||||||| ||||||||||| ||||||||    
T  24413497 agctatgaagcacggacacttctcggattagacgtgtcccg 24413537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 26915235 - 26915299
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||||||  | || ||||| | |||||||||||||| ||||| | |||||||||||    
T  26915235 cgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 43554585 - 43554521
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||||| ||||||    
T  43554585 cgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgtgtc 43554521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 18162096 - 18162050
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtctgatg 355  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||    
T  18162096 ttacactgaattatgtcattttcttaaattattatccgtgtctgatg 18162050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 4344783 - 4344742
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  4344783 ttacactgaattatgtcattttttcaaattattatcggtgtc 4344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 5467974 - 5468031
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatc 344  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| |||||||||||||    
T  5467974 gacaccgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 18607079 - 18607156
Alignment:
Q  273 cggtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||| |||| | |||| ||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||| ||||    
T  18607079 cggtgtcggacaccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtc 18607156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 24906319 - 24906359
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  24906319 ttacactgaattatgtcattttttcaaattattatctgtgt 24906359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 39695995 - 39696058
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||| || |||||    
T  39695995 gacaccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtc 39696058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 26205755 - 26205805
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaa 336  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||| |||||    
T  26205755 cgacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 13287417 - 13287458
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  13287417 ttacactgaattatgtgattttttcaaattattatctgtgtc 13287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||  |||| |||||||||||||||||||||| |||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 38749581 - 38749622
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  38749581 ttacattgaattatgtcattttttcaaattattatcggtgtc 38749622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 17123166 - 17123122
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcgg 275  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcccgtgtcgg 17123122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 42469268 - 42469221
Alignment:
Q  303 ctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||| ||||||| || ||||||||||| |||||||||||||||||||    
T  42469268 ctatgattacactaaaatatgtcattttctcaaattattatccgtgtc 42469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 2577193 - 2577239
Alignment:
Q  304 tatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| ||||||| |||||||||||||| ||||||||||||| |||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 7997166 - 7997224
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgt 349  Q
    |||||||||||  |||  |||||||| ||||| ||||||| ||||||||||||||||||    
T  7997166 ccgacacgacacttataattacactgtattatatcattttctcaaattattatccgtgt 7997224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 18586291 - 18586344
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgt 347  Q
    ||||||||| ||||  |||||||| ||||||||| ||||||||||||||||||||    
T  18586291 gacacgacacctataattacactgtattatgtca-tttttcaaattattatccgt 18586344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 6247663 - 6247630
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  6247663 ttacactgaattatgtgattttttcaaattatta 6247630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 6471907 - 6471948
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||| ||||| ||||||||||| |||||||    
T  6471907 ttacactgaattatgtgattttctcaaattattagccgtgtc 6471948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 17593661 - 17593690
Alignment:
Q  229 agctatgaagtacggacactcctcggatta 258  Q
    ||||||||||||||||||||||||||||||    
T  17593661 agctatgaagtacggacactcctcggatta 17593690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 18288053 - 18288110
Alignment:
Q  293 gacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| |||| ||||| ||| ||||| ||| |||||||| |||||||||||||||||||    
T  18288053 gacatgacacctatgattatactgagttaagtcattttctcaaattattatccgtgtc 18288110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 21191074 - 21191107
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  21191074 ttacactgaattatgtgattttttcaaattatta 21191107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 21576763 - 21576796
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  21576763 ttacactgaattatgtgattttttcaaattatta 21576796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 25863268 - 25863211
Alignment:
Q  286 cgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattat 343  Q
    |||||| |||||||||  |||  |||||||||||||| ||||||| ||||||||||||    
T  25863268 cgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 39698582 - 39698549
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  39698582 ttacactgaattatgtgattttttcaaattatta 39698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 43001841 - 43001808
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  43001841 ttacactgaattatgtaattttttcaaattatta 43001808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 3966632 - 3966596
Alignment:
Q  232 tatgaagtacggacactcctcggattagatgtgtccc 268  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3966632 tatgaagcacggacactcctcggattagacgtgtccc 3966596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 6247729 - 6247670
Alignment:
Q  231 ctatgaagtacggacactcctcggattagatgtgtcccgtgtcggtgtccgacatcgacac 291  Q
    |||||||| || |||||| |||||||||| ||||||||||| | |||||||||| ||||||    
T  6247729 ctatgaagcacagacacttctcggattaggtgtgtcccgtg-ccgtgtccgacaccgacac 6247670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 21137749 - 21137697
Alignment:
Q  290 accgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||| ||||| || |||||||||| |||||||| ||| |||||||    
T  21137749 accgacacgacacctatgatttcactgaattacgtcattttctcagattatta 21137697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 28296368 - 28296328
Alignment:
Q  310 tacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||| |||||||||||||||| ||||||||||||| |||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 2008 - 1949
Alignment:
Q  291 ccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    ||||||||||| ||||| ||||||| || |||||||||||  ||||||||||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 13544 - 13505
Alignment:
Q  230 gctatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  13544 gctatgaagtacggacactcctcggattaggtgtatcccg 13505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 33360 - 33414
Alignment:
Q  287 gacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| | |  |||||||||||||||| |||||||||||||||||    
T  33360 gacaccgacacgacat-tgtaattacactgaattatgttattttttcaaattatta 33414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 225253 - 225327
Alignment:
Q  275 gtgtccgacatcgacaccgacacgacatctatgtttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||| ||||||| ||||||||  |||  ||||| || ||||||||||||| ||||||||||||| |||||    
T  225253 gtgtccgaca-cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtc 225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 1076 - 1043
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  1076 ttacactgaattatgtaattttttcaaattatta 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 403 - 440
Alignment:
Q  232 tatgaagtacggacactcctcggattagatgtgtcccg 269  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccg 440  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 14571 - 14538
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  14571 ttacactgaattatgtgattttttcaaattatta 14538  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 20213 - 20180
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  20213 ttacactgaattatgtgattttttcaaattatta 20180  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 3867 - 3908
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattattatccgtgtc 350  Q
    |||||||||||||||| ||||||| ||||||||| |||||||    
T  3867 ttacactgaattatgtgatttttttaaattattaaccgtgtc 3908  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 51852 - 51819
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  51852 ttacactgaattatgtgattttttcaaattatta 51819  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 70319 - 70286
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  70319 ttacactgaattatgttattttttcaaattatta 70286  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 46723 - 46690
Alignment:
Q  309 ttacactgaattatgtcattttttcaaattatta 342  Q
    |||||||||||||||| |||||||||||||||||    
T  46723 ttacactgaattatgtgattttttcaaattatta 46690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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