View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_31 (Length: 312)
Name: NF2568_high_31
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 49 - 295
Target Start/End: Complemental strand, 8073099 - 8072853
Alignment:
| Q |
49 |
tcaaatatctttacaaaacttccttttcagtacatttgaatttctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtt |
148 |
Q |
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| T |
8073099 |
tcaaatatctttacaaaacttccttttcagtacatttgaatttctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtt |
8073000 |
T |
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| Q |
149 |
tgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttgagctgctgccaaaactctatttgttgtagtttcatcgaa |
248 |
Q |
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| T |
8072999 |
tgctattgtttccaaaaggtttcttgagcctgaaaatttgaagccttgtcttcctagcttgagctgctgccaaaactctatttgttgtagtttcatcgaa |
8072900 |
T |
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| Q |
249 |
ctgttgatacgaggccgcgtcgatcaactcttctgctgttgagttca |
295 |
Q |
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| T |
8072899 |
ctgttgatacgaggccgcgtcgatcaactcttctgctgttgagttca |
8072853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 8069454 - 8069323
Alignment:
| Q |
85 |
tgaatttctaaaagagagaggaaactaagaaggaaataaaatatacatcaaattaaatattgtttgctattgtttccaaaaggtttcttgagcctgaaaa |
184 |
Q |
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| T |
8069454 |
tgaatttctaaaagagag--gaaactaaaaaggaaataaaataaacatcaaaatgaatgttgtttactcttgtttccaaaaggttttttgagcctgaatt |
8069357 |
T |
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| Q |
185 |
tttgaagccttgtcttcctagcttgagctgctgc |
218 |
Q |
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| T |
8069356 |
tctgaagccttctttgcctagcttgagctgctgc |
8069323 |
T |
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