View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_high_37 (Length: 284)

Name: NF2568_high_37
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_high_37
NF2568_high_37
[»] chr3 (2 HSPs)
chr3 (38-277)||(8961434-8961674)
chr3 (38-277)||(3299279-3299518)
[»] chr8 (1 HSPs)
chr8 (38-274)||(44614313-44614549)
[»] chr4 (4 HSPs)
chr4 (38-277)||(1993926-1994165)
chr4 (38-274)||(56559035-56559271)
chr4 (76-277)||(9404161-9404360)
chr4 (38-277)||(20358986-20359207)
[»] chr7 (1 HSPs)
chr7 (38-277)||(22249057-22249296)
[»] chr2 (1 HSPs)
chr2 (102-277)||(20266142-20266317)
[»] scaffold0014 (1 HSPs)
scaffold0014 (38-277)||(8586-8806)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 8961674 - 8961434
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaa-catttggcatattatacatcgattattagcaaaatcaggtgaaat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||    
T  8961674 aataattgaaacaaaataactatattttcttccctaataattccttctattaaaacatttggcatattatacatcaattattagcaaaatcatgtgaaat 8961575  T
Q  137 ggaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataaga 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8961574 ggaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtattataaga 8961475  T
Q  237 gttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  8961474 gttgtaagtacacatataatccatgtgtctaatattcttcg 8961434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 3299518 - 3299279
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||    
T  3299518 aataattgaaacaaaataactatattttcttccataataattccttctattaaacatttggtatataatacatcaattattagcaaaatcatgtgaaatg 3299419  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagag 237  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  3299418 aaaatgaatttggattattctttaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaaataatatttgtattataagag 3299319  T
Q  238 ttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  3299318 ttgtaagtacacatataatccatgtgtctaatattcttcg 3299279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 38 - 274
Target Start/End: Complemental strand, 44614549 - 44614313
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  44614549 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatctggcatattatacatcaattattagcaaaatcacgtgaaatg 44614450  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagag 237  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44614449 gaaatgaatttggattattttctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacctttttaataaaactaatatttgtattataagag 44614350  T
Q  238 ttgtaagtatacatataatccatgtgtctaatattct 274  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44614349 ttgtaagtacacatataatccatgtgtctaatattct 44614313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 1994165 - 1993926
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  1994165 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatctggcatattatacatcaattattagcaaaatcacgtgaaatg 1994066  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagag 237  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  1994065 gaaatgaatttggattattctctaaaacttgacctgtaagaatagaaaaatattgaaacaaaaaacctttttaataaaactaatatttgtattataagag 1993966  T
Q  238 ttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  1993965 ttgtaagtacacatataatccatgtatctaatattcttcg 1993926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 38 - 274
Target Start/End: Original strand, 56559035 - 56559271
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  56559035 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatctggcatattatacatcaattattagcaaaatcacgtgaaatg 56559134  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagag 237  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  56559135 gaaatgaatttggattattatctaaaacatgacatgtaagaatagaaaaatattgaaacaaaaaacctttttaataaaactaatatttgtattataagag 56559234  T
Q  238 ttgtaagtatacatataatccatgtgtctaatattct 274  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  56559235 ttgtaagtacacatataatccatgtatctaatattct 56559271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 76 - 277
Target Start/End: Original strand, 9404161 - 9404360
Alignment:
Q  76 aattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatggaaatgaatttggattattctctaaaacgtgacttgta 175  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  9404161 aattccttctattaaacatttggcatattatacatcaattattagcaaaatcacgtgaaatggaaatgaatttggattattctttaaaacgtgacttgta 9404260  T
Q  176 agaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagagttgtaagtatacatataatccatgtgtctaatattctt 275  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||    
T  9404261 agaatagaaaaatattgaaacaaaaaactttttcaataaaactaatatttgtattataagagttgtaag--tacacataatccatgtgtctaatattctt 9404358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 20359207 - 20358986
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  20359207 aataattgaaacaaaataactatattttcttccctaatgattccttctattaaacatttggcatattatacatcaattattagcaaaatcacgtgaaatg 20359108  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttt-tttaataaaactaatatttgtactataaga 236  Q
     |||||||||||||||||||| ||||| ||||||||||||                   |||||||||| |||||||||||||||||||||| ||||| |    
T  20359107 aaaatgaatttggattattctttaaaatgtgacttgtaag-------------------aaaaaactttctttaataaaactaatatttgtattataaaa 20359027  T
Q  237 gttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
    |||||||||  |||||||| |||||||||||||||||||||    
T  20359026 gttgtaagttcacatataacccatgtgtctaatattcttcg 20358986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 38 - 277
Target Start/End: Complemental strand, 22249296 - 22249057
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  |||||| | |||||||||||||| || |||||    
T  22249296 aataattgaaacaaaataactatattttctttcctaataattccttctattaaacatttggtatatattacatcaactattagcaaaatcacgtaaaatg 22249197  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagag 237  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22249196 aaaatgaatttggattattctttaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtattataagag 22249097  T
Q  238 ttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
    ||| ||||| ||||||||||||||||||||||||||||||    
T  22249096 ttgcaagtacacatataatccatgtgtctaatattcttcg 22249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 102 - 277
Target Start/End: Complemental strand, 20266317 - 20266142
Alignment:
Q  102 attatacatcgattattagcaaaatcaggtgaaatggaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaa 201  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  20266317 attatacatcaattattagcaaaatcatgtgaaatggaaatgaatttggattattctttaaaacgtgacttgtgagaatagaaaaatattgaaacaaaaa 20266218  T
Q  202 acttttttaataaaactaatatttgtactataagagttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
     |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20266217 tcttttttaataaaactaacatttgtattataagagttgtaagtacacatataatccatgtgtctaatattcttcg 20266142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 38 - 277
Target Start/End: Original strand, 8586 - 8806
Alignment:
Q  38 aataattgaaacaaaataactatattttcttccctaataattccttctattaaacatttggcatattatacatcgattattagcaaaatcaggtgaaatg 137  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  8586 aataattgaaacaaaataactatattttatttcctaataattccttctattaaacatttggcatattatacatcaattattagcaaaatcatgtgaaatg 8685  T
Q  138 gaaatgaatttggattattctctaaaacgtgacttgtaagaatagaaaaatattgaaacaaaaaacttttttaataaaactaatatttgtactataagag 237  Q
    ||||||||||||||||||||| ||||||||||||||||||                   |||||||||||||||||||||| ||||||||| ||| ||||    
T  8686 gaaatgaatttggattattctttaaaacgtgacttgtaag-------------------aaaaaacttttttaataaaactcatatttgtattatgagag 8766  T
Q  238 ttgtaagtatacatataatccatgtgtctaatattcttcg 277  Q
    ||||||||| || |||||||||||| ||||||||||||||    
T  8767 ttgtaagtacacgtataatccatgtatctaatattcttcg 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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