View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2568_high_45 (Length: 251)

Name: NF2568_high_45
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2568_high_45
NF2568_high_45
[»] chr3 (5 HSPs)
chr3 (17-242)||(22432454-22432680)
chr3 (21-94)||(19280325-19280398)
chr3 (21-87)||(26308555-26308621)
chr3 (21-94)||(3823564-3823637)
chr3 (21-86)||(5342004-5342069)
[»] chr7 (5 HSPs)
chr7 (21-99)||(22740064-22740142)
chr7 (21-94)||(28805146-28805219)
chr7 (21-64)||(5083731-5083774)
chr7 (21-91)||(22033188-22033257)
chr7 (21-94)||(31303366-31303439)
[»] chr1 (10 HSPs)
chr1 (108-186)||(15803110-15803187)
chr1 (21-94)||(34490316-34490389)
chr1 (21-87)||(29677001-29677067)
chr1 (21-87)||(5831660-5831726)
chr1 (22-88)||(13350902-13350968)
chr1 (21-87)||(13351013-13351079)
chr1 (30-88)||(29677206-29677264)
chr1 (21-86)||(5855232-5855297)
chr1 (21-94)||(34490102-34490175)
chr1 (21-85)||(2995924-2995987)
[»] chr8 (3 HSPs)
chr8 (21-94)||(31596708-31596781)
chr8 (21-88)||(26493251-26493318)
chr8 (23-91)||(31273687-31273755)
[»] chr6 (8 HSPs)
chr6 (21-87)||(9068533-9068599)
chr6 (17-88)||(22608280-22608351)
chr6 (21-99)||(7915721-7915799)
chr6 (21-94)||(18980404-18980477)
chr6 (22-87)||(7915617-7915683)
chr6 (21-87)||(23595074-23595140)
chr6 (17-94)||(13767116-13767193)
chr6 (21-94)||(24386339-24386412)
[»] chr5 (7 HSPs)
chr5 (21-94)||(43262823-43262896)
chr5 (21-94)||(35922621-35922694)
chr5 (21-94)||(36169314-36169387)
chr5 (25-89)||(35922864-35922928)
chr5 (18-81)||(30704311-30704374)
chr5 (28-94)||(43461830-43461896)
chr5 (30-87)||(7156000-7156057)
[»] chr4 (7 HSPs)
chr4 (21-88)||(17633464-17633531)
chr4 (21-83)||(24669301-24669363)
chr4 (30-94)||(9810673-9810737)
chr4 (21-87)||(17633257-17633323)
chr4 (21-94)||(1966743-1966815)
chr4 (21-89)||(9810891-9810959)
chr4 (22-82)||(35544543-35544603)
[»] chr2 (5 HSPs)
chr2 (21-87)||(30906174-30906240)
chr2 (21-94)||(1400682-1400755)
chr2 (21-94)||(28527232-28527304)
chr2 (21-94)||(41212434-41212507)
chr2 (30-94)||(33667452-33667516)
[»] scaffold1126 (2 HSPs)
scaffold1126 (22-87)||(123-189)
scaffold1126 (23-93)||(334-404)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 22432454 - 22432680
Alignment:
Q  17 tgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtcgatctcattgctctttctaaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  22432454 tgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaagggtgtacacattaagagtgtcgatatcattgctctttctaaaa 22432553  T
Q  117 atattatgatagaaaagcaaaacgttcactaagtttataccttcgtattctttcttatatttttaaaggtattgttataaccctttt-nnnnnnnnntct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||          |||    
T  22432554 atattatgatagaaaagcaaaacgttcactaagtttataccttcgtattctttcttatatttttaaaggtattgttataaaccttttaaaaaaaaaatct 22432653  T
Q  216 tgtgtaaaattaaatctttagaataat 242  Q
    |||||||||||||||||||| ||||||    
T  22432654 tgtgtaaaattaaatctttataataat 22432680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 19280325 - 19280398
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||||||||||||||||||| ||| ||| |||||| |||| ||||||  ||||||||||||||| |||||    
T  19280325 gtcacacagaccatatatttgattaactaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtc 19280398  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 26308621 - 26308555
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    |||||||| |||||||||||  || ||| | ||||||||||||| |||||||| ||||||| |||||    
T  26308621 gtcacacaaaccatatatttagttaactgatatttttcaaagtgatacaaaaaagtgtacatattaa 26308555  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 3823637 - 3823564
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||| ||| || ||| |||||||  | |||| ||||||  ||||||||||||||| |||||    
T  3823637 gtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtc 3823564  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 5342004 - 5342069
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacatta 86  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||  ||||||  ||||||| |||||    
T  5342004 gtcacacagaccatatattcgattaactgaaatttttcagagtcgtacaaaggggtgtacgcatta 5342069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 22740142 - 22740064
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtcgatct 99  Q
    |||||||||||||||||||||||| ||| |||| ||||| |||| |||| | |||||||||||||||||||||| ||||    
T  22740142 gtcacacagaccatatatttgattaacttaaatatttcagagtgatacatagaggtgtacacattaagagtgtcaatct 22740064  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 28805146 - 28805219
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||| |||||||||||| || ||| |||||||||| |||| ||||||  ||| ||||||||||| |||||    
T  28805146 gtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtc 28805219  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 5083774 - 5083731
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtg 64  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||    
T  5083774 gtcacaaagaccatatatttgattaactgaaatttttcaaagtg 5083731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 22033188 - 22033257
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagt 91  Q
    ||||||||||||||||||||| || ||| |||||||||| | || ||| ||| | ||||||||||||||||    
T  22033188 gtcacacagaccatatatttggttaactaaaatttttcagaatggtac-aaaggatgtacacattaagagt 22033257  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 31303439 - 31303366
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||| |||||||| |||||| || ||| |||||||||| |||| ||||||  | ||||||||||||| |||||    
T  31303439 gtcacgcagaccatgtatttggttgactgaaatttttcagagtgatacaaatggatgtacacattaagggtgtc 31303366  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 15803110 - 15803187
Alignment:
Q  108 tttctaaaaatattatgatagaaaagcaaaacgttcactaagtttataccttcgtattctttcttatatttttaaaggt 186  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||||  || |||||||||||||||||| ||||||    
T  15803110 tttctaaaaagattat-atagaaaagcaaaacgttcactaagcttatactgtcatattctttcttatattttaaaaggt 15803187  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 34490316 - 34490389
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||  |  ||| |||||||||| |||| ||||||  |||||||||||||||||||||    
T  34490316 gtcacacagaccatatattttgtaaactgaaatttttcagagtggtacaaagtggtgtacacattaagagtgtc 34490389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 29677067 - 29677001
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||||||| ||||||||||| || ||| ||||||||||||||||||||||  |  |||||||||||    
T  29677067 gtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaagggacgtacacattaa 29677001  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 5831660 - 5831726
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||||||||||||||||||| || | | |||||||||| |||| ||||||  ||||||||| ||||    
T  5831660 gtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaaggggtgtacacgttaa 5831726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 13350968 - 13350902
Alignment:
Q  22 tcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaag 88  Q
    ||||||| |||||||||||| || ||| |||||||  | |||| ||||||| |||||||||||||||    
T  13350968 tcacacataccatatatttggttaactgaaattttcgagagtggtacaaaagggtgtacacattaag 13350902  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 13351013 - 13351079
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    |||||| |||||||||||||| || | | |||||||||| |||| ||||||  ||||||||||||||    
T  13351013 gtcacaaagaccatatatttggttaagttaaatttttcagagtggtacaaaggggtgtacacattaa 13351079  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 29677206 - 29677264
Alignment:
Q  30 accatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaag 88  Q
    |||||||||||| || ||| |||||||| | |||| |||||| ||||||||||||||||    
T  29677206 accatatatttgtttaacttaaatttttgagagtggtacaaagaggtgtacacattaag 29677264  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 5855232 - 5855297
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacatta 86  Q
    |||||||| |||||||||||| || ||| |||||||||| |||| |||||||  ||||||| ||||    
T  5855232 gtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaagagtgtacatatta 5855297  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 34490175 - 34490102
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||  || ||| ||||||| || |||| ||| ||||| | ||||||||||| |||||    
T  34490175 gtcacacagaccatatatttagttaactgaaattttacatagtggtaccaaaagatatacacattaagggtgtc 34490102  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 2995987 - 2995924
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacatt 85  Q
    |||||||| ||||||||||||||| | | || |||||||||||| ||||||| | ||||||||||    
T  2995987 gtcacaca-accatatatttgattaattaaattttttcaaagtggtacaaaaggatgtacacatt 2995924  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 31596781 - 31596708
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||| ||||||||||||||| |||  |||||||||||||| |||||| ||||||||| ||||||||||||    
T  31596781 gtcacacataccatatatttgattaactgtaatttttcaaagtggtacaaagaggtgtacatattaagagtgtc 31596708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 26493318 - 26493251
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaag 88  Q
    |||||| ||||||||||||||||| | | |||||||| |||||| || ||||| ||||||||||||||    
T  26493318 gtcacatagaccatatatttgattaagtaaaattttttaaagtggtataaaaaagtgtacacattaag 26493251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 31273687 - 31273755
Alignment:
Q  23 cacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagt 91  Q
    |||| ||||||||||||||||| | | |||||||  | |||| ||||||||||| ||||||||||||||    
T  31273687 cacatagaccatatatttgattaattgaaattttcgagagtggtacaaaaaggtatacacattaagagt 31273755  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 9068533 - 9068599
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| ||||||| ||||||||||||||    
T  9068533 gtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaagggtgtacacattaa 9068599  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 22608351 - 22608280
Alignment:
Q  17 tgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaag 88  Q
    ||||||||||||||||||||||||| || ||| |||||||| | |||| ||||||  |||||||||||||||    
T  22608351 tgtagtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaaggggtgtacacattaag 22608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 7915721 - 7915799
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtcgatct 99  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||| || || | |||||||||||||||| |||| ||||    
T  7915721 gtcacacagacgatatatttgattaactgaaatttttcagagtggtaaaagagggtgtacacattaagaatgtctatct 7915799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 18980404 - 18980477
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||| |||||||||||||  || ||| | ||||| || |||| ||||||||||||| |||||||||||||||    
T  18980404 gtcacatagaccatatatttagttaacttagattttgcagagtggtacaaaaaggtgtgcacattaagagtgtc 18980477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 7915683 - 7915617
Alignment:
Q  22 tcacacagaccatatatttgatttactcaaattttt-caaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||||| |||| |||||||||| ||| |||||||| || |||| ||||||| ||||||||||||||    
T  7915683 tcacacataccacatatttgattaactgaaattttttcagagtgatacaaaagggtgtacacattaa 7915617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 23595140 - 23595074
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||||||||||||||||||  || ||| |||||||  | |||| ||||||| ||||||||||||||    
T  23595140 gtcacacagaccatatatttagttaacttaaattttcgagagtgatacaaaagggtgtacacattaa 23595074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 13767193 - 13767116
Alignment:
Q  17 tgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||| |||||||||||||||| || ||| |||||||  | |||| ||||||   ||||||||||| ||||||||    
T  13767193 tgtagtcagacagaccatatatttggttaacttaaattttctagagtgatacaaaggagtgtacacatttagagtgtc 13767116  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 24386339 - 24386412
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||| || ||| ||||||||||  ||| || |||  | ||||||||||||| |||||    
T  24386339 gtcacacagaccatatatttggttaacttaaatttttcagcgtggtataaagggatgtacacattaagggtgtc 24386412  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 43262823 - 43262896
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||| || ||| ||||||||||||||  ||||||  ||||||||||||||| |||||    
T  43262823 gtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtc 43262896  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 35922694 - 35922621
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||| ||||||||||||||| ||| |||||||||| |||| ||||||  | ||||||||||||| |||||    
T  35922694 gtcacacataccatatatttgattaactgaaatttttcagagtgatacaaagggatgtacacattaagtgtgtc 35922621  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 36169387 - 36169314
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||  |||||||||||| || ||| ||||||||||||||| |||||| ||  ||||||||||||||||||    
T  36169387 gtcacacctaccatatatttggttaactaaaatttttcaaagtggtacaaagagaagtacacattaagagtgtc 36169314  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 35922864 - 35922928
Alignment:
Q  25 cacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaaga 89  Q
    ||||||||||| ||||| || ||| ||||||||||||||| ||||||  ||||||||||||||||    
T  35922864 cacagaccataaatttggttaacttaaatttttcaaagtgatacaaagcggtgtacacattaaga 35922928  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 30704374 - 30704311
Alignment:
Q  18 gtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtaca 81  Q
    ||||||||  ||||||||||||||||| ||| ||||||| || |||| ||||||||||||||||    
T  30704374 gtagtcacggagaccatatatttgattaactgaaattttacagagtggtacaaaaaggtgtaca 30704311  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 43461830 - 43461896
Alignment:
Q  28 agaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||| ||| |||||||  |||||||||||||  |||  ||||||||||||||||    
T  43461830 agaccatatatttgattaactgaaattttcaaaagtgctacaaaggggtacacacattaagagtgtc 43461896  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 7156057 - 7156000
Alignment:
Q  30 accatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||||||||||||| ||| |||||||  |||||| ||||||||| ||||||||||||    
T  7156057 accatatatttgattaactgaaattttctaaagtggtacaaaaagatgtacacattaa 7156000  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 17633464 - 17633531
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaag 88  Q
    ||||||||||||||||||||| || ||| ||||||||||||||| ||||||  |||||||| ||||||    
T  17633464 gtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaaggggtgtacatattaag 17633531  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 24669301 - 24669363
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacaca 83  Q
    |||||||||||||||||||||||| ||| |||||||||| |||| ||||||  ||||||||||    
T  24669301 gtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaaggggtgtacaca 24669363  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 9810737 - 9810673
Alignment:
Q  30 accatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||| ||| ||| |||||||||| |||| ||||||| |||||||| |||||| |||||    
T  9810737 accatatatttaattaactgaaatttttcatagtggtacaaaagggtgtacatattaagggtgtc 9810673  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 17633323 - 17633257
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||||||||||||||||||| || ||| |||||||||  |||| ||||||   |||||||||||||    
T  17633323 gtcacacagaccatatatttggttaactaaaatttttcggagtggtacaaatgagtgtacacattaa 17633257  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 1966815 - 1966743
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||| || ||| ||| |||||| |||| ||||||| |||||| ||| |||| |||||    
T  1966815 gtcacacagaccatatatttggttaactgaaa-ttttcagagtggtacaaaagggtgtatacagtaagggtgtc 1966743  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 9810891 - 9810959
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaaga 89  Q
    ||||||||||||||||||||| || ||| ||| |||  | |||| |||||| |||| ||||||||||||    
T  9810891 gtcacacagaccatatatttggttaacttaaaatttctagagtggtacaaataggtttacacattaaga 9810959  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 35544543 - 35544603
Alignment:
Q  22 tcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacac 82  Q
    ||||||| ||||||||||||||| ||| |||||||| |||||  || || |||||||||||    
T  35544543 tcacacataccatatatttgattaactgaaatttttaaaagtaatataataaggtgtacac 35544603  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 30906174 - 30906240
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaa 87  Q
    ||||| ||||||||||||||| || ||| |||||||||| |||| ||||||| ||||||||||||||    
T  30906174 gtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaagggtgtacacattaa 30906240  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 1400755 - 1400682
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||| |||||||||||| || ||| |||||||||| | || ||||||| ||||||||||||||| |||||    
T  1400755 gtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagggtgtacacattaagggtgtc 1400682  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 28527304 - 28527232
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||| ||  || ||||||||||||||| ||||||  |||||||| |||||| |||||    
T  28527304 gtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaaggggtgtaca-attaagggtgtc 28527232  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 41212434 - 41212507
Alignment:
Q  21 gtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    ||||||||||||||||||||| || ||| |||||||||| |||| ||||||  ||| |||| |||||| |||||    
T  41212434 gtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaaggggtatacatattaagggtgtc 41212507  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 33667452 - 33667516
Alignment:
Q  30 accatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgtc 94  Q
    |||||||||||| || ||| |||||||||| |||| |||||||  ||||||| |||||| |||||    
T  33667452 accatatatttggttaactaaaatttttcagagtggtacaaaagagtgtacatattaagggtgtc 33667516  T

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Target: scaffold1126 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 189 - 123
Alignment:
Q  22 tcacacagaccatatatttgatttactcaaatttttcaa-agtgctacaaaaaggtgtacacattaa 87  Q
    |||||||| ||||||||||| || ||| ||||||||||| |||| ||||||||  ||||||||||||    
T  189 tcacacagtccatatatttggttaactgaaatttttcaagagtggtacaaaaaaatgtacacattaa 123  T

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Target: scaffold1126; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 334 - 404
Alignment:
Q  23 cacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaaaggtgtacacattaagagtgt 93  Q
    ||||||||||||||||||| || ||| ||| |||||| |||| |||||| || |||||| |||||| ||||    
T  334 cacacagaccatatatttggttaactgaaaattttcagagtggtacaaagagatgtacaaattaagggtgt 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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