View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2568_high_47 (Length: 249)
Name: NF2568_high_47
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_47 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 30876842 - 30877084
Alignment:
| Q |
7 |
ggagcaaagggtgttgaacccaagatgcactataaggtagcaaagtgtttaccgctaggccaagtaactaaatatgataattttccaacatatattatat |
106 |
Q |
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| T |
30876842 |
ggagcaaagggtgttgaacccaagacgcactacaaggtagcaaagtgtttaccgctaggccaagtaactaaatatgataattttccaacatatattatat |
30876941 |
T |
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| Q |
107 |
ataatgcattacttatgactagtatattnnnnnnnnnnttaggtattaatccagtgtggccgttgccacaccgtgccttacggtggatccgcctctagtc |
206 |
Q |
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| T |
30876942 |
ataatgcattacttatgactaatatattaaaaaaaaaaataggtattaatccagtgtggccattgccacaccgtgccttacggtgaatccgcctctaatc |
30877041 |
T |
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| Q |
207 |
acttgaatagatcatcttgcataccgtgacctgcatattttgt |
249 |
Q |
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| T |
30877042 |
acctgaatagatcatcacgcataccatgacctgcatattttgt |
30877084 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 30876665 - 30876716
Alignment:
| Q |
7 |
ggagcaaagggtgttgaacccaagatgcactataaggtagcaaagtgtttac |
58 |
Q |
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| T |
30876665 |
ggagcaaagggtgttgaacccaagacgcactacaaggtagcaaagtgtttac |
30876716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 23658015 - 23657954
Alignment:
| Q |
54 |
tttaccgctaggccaagtaactaaatatgataattttccaacatatattatatataatgcat |
115 |
Q |
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| T |
23658015 |
tttaccgctaggccaagtaactaaacatgataatcttccaacatatattatatataatgcat |
23657954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 42981310 - 42981391
Alignment:
| Q |
53 |
gtttaccgctaggccaagtaactaaatatgataattttccaacatatattatatataatgcattacttatgactagtatatt |
134 |
Q |
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| T |
42981310 |
gtttaccactaggccaagtaattaaacatcataatcttccaacatatattatatataatgcaatatttaagactaatatatt |
42981391 |
T |
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