View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2568_high_5 (Length: 651)
Name: NF2568_high_5
Description: NF2568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2568_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 43658128 - 43658651
Alignment:
| Q |
8 |
ttattattcacgacaggtttatcacgacggatgaggagttctttttatttaatgtgtacgctccttgtgatattcgagctaaacatgatttgtgggtttc |
107 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658128 |
ttattattcacggcaggtttatcacgatggatgaggagttctttttatttaatgtgtacgctccttgtgatattcgagctaaacatgatttgtgggtttc |
43658227 |
T |
|
| Q |
108 |
cttgtcgactcggttacttcggtggagagggaagaaggtgggtgtgcgtgggtggggatttcaatgcggcgcgcagggtgaaagaaagaaggtcgactcg |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||||||||| ||||| |
|
|
| T |
43658228 |
cttgtagactcggttacttcggtggagagggaagaaggtgtgtgcgcgcggg----gatttcaatgcggtgcgcagggtggaagaaagaaggtcaactcg |
43658323 |
T |
|
| Q |
208 |
gcgtg------acacaa-gaattttgtgccttataataattttattcaagaaaatatgctaattcatttaccgttgtgcagtctgaggtccacatggttt |
300 |
Q |
| |
|
||||| || ||| |||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||| ||| |||||| |
|
|
| T |
43658324 |
gcgtgggggtgacgcaacgaattttgcgccttttaataattttattgaagaaaatatgctaattgatttaccgttatgcggtctgaggttcacgtggttt |
43658423 |
T |
|
| Q |
301 |
aagggcgatggcgtatctatgaataggattgacagatttttgctattggaggagtggtgcttaagatggcctaatagtcttcagattggtcttcttcgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43658424 |
aagggcgatggcgtatctatgaataggattgacagatttttgctatcggaggagtggtgcttaagatggcctaatagtcttcagattggtcttctttgtg |
43658523 |
T |
|
| Q |
401 |
gggtttccgatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggtta |
500 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
43658524 |
gggtttccgatcattgcccgcttcagttgtcagtggatgaggaaaattggggtcctcatcctactcgtgtgttgaaatgctggcaagacatgtctggtta |
43658623 |
T |
|
| Q |
501 |
taagcagtttgtagtcgaagtagtttta |
528 |
Q |
| |
|
||| ||||||||||| |||||||||||| |
|
|
| T |
43658624 |
taaacagtttgtagttgaagtagtttta |
43658651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 555 - 629
Target Start/End: Original strand, 43658730 - 43658804
Alignment:
| Q |
555 |
tgaagattttttctctcccaatgatttcaattgtgaatgtggtggttaggaagtatttcatagaatatagttccc |
629 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
43658730 |
tgaagattttttctctcccaatgatttctattgtgaatgtggtggctaggaagtatttcattgaatatagttccc |
43658804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 512
Target Start/End: Original strand, 23052477 - 23052634
Alignment:
| Q |
355 |
tggtgcttaagatggcctaatagtcttcagattggtcttcttcgtggggtttccgatcattacccgcttcagttgtcggtggatgaggaaaattggggtc |
454 |
Q |
| |
|
||||||||||||||||| || | |||||||||| |||||| | ||| || || ||||| | ||| ||| ||| || |||||| ||||||||| ||| | |
|
|
| T |
23052477 |
tggtgcttaagatggccaaactgccttcagattgctcttctccatggtgtatcggatcactgccctctttagtagtttgtggataaggaaaatttgggac |
23052576 |
T |
|
| Q |
455 |
ctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagtttgt |
512 |
Q |
| |
|
| ||||| |||| ||| ||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
23052577 |
cgcgtccgtctcgaatgttgaagtgttggcaagagatgcctggttataagcagtttgt |
23052634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 31677528 - 31677425
Alignment:
| Q |
409 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
508 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||| || ||||| ||| | || |||||| |||||||||||||| ||||| || |||| |
|
|
| T |
31677528 |
gatcattgtccgcttcagttgtcggttgatgaggaaaactggggaccgcgtccaactagaatgctgaaatgttggcaagacatgccgggttacaaacagt |
31677429 |
T |
|
| Q |
509 |
ttgt |
512 |
Q |
| |
|
|||| |
|
|
| T |
31677428 |
ttgt |
31677425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 512
Target Start/End: Original strand, 3542644 - 3542747
Alignment:
| Q |
409 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
508 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||| | || |||||| |||||||| ||||| |||||||| |||| |
|
|
| T |
3542644 |
gatcattgtccgcttcagctgtcggttgatgaggaaaattggggaccgcgtccaactagaatgctgaaatgttggcaagatatgccgggttataaacagt |
3542743 |
T |
|
| Q |
509 |
ttgt |
512 |
Q |
| |
|
|||| |
|
|
| T |
3542744 |
ttgt |
3542747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 5811178 - 5811075
Alignment:
| Q |
409 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
508 |
Q |
| |
|
||||||| ||||||||||| || ||||||||| |||||||||| || ||||| || | ||| ||||| |||||||| ||||||| |||||||||| |
|
|
| T |
5811178 |
gatcattgtccgcttcagttatctgtggatgagaaaaattggggaccccgtccgtctagaatgttaaaatgttggcaagatttgcctggctataagcagt |
5811079 |
T |
|
| Q |
509 |
ttgt |
512 |
Q |
| |
|
|||| |
|
|
| T |
5811078 |
ttgt |
5811075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 628
Target Start/End: Complemental strand, 34314327 - 34314259
Alignment:
| Q |
561 |
ttttttctctcccaatgatttcaattgtgaatgtggtggt-taggaagtatttcatagaatatagttcc |
628 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
34314327 |
ttttttttctcccaatgacttcaactgcgaatgtcgtgtactaggaagtatttcatagaatatagttcc |
34314259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 509
Target Start/End: Complemental strand, 6825950 - 6825850
Alignment:
| Q |
409 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
508 |
Q |
| |
|
||||||| |||| | |||||||| |||||||||||||||||||| || ||||| || | || |||||| |||||||| ||| | ||||||||||||| |
|
|
| T |
6825950 |
gatcattgcccgttgcagttgtctgtggatgaggaaaattggggaccccgtccgtctagaatgctgaaatgttggcaagagatgtcgggttataagcagt |
6825851 |
T |
|
| Q |
509 |
t |
509 |
Q |
| |
|
| |
|
|
| T |
6825850 |
t |
6825850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 503
Target Start/End: Original strand, 17603942 - 17603971
Alignment:
| Q |
474 |
gaaatgctggcaagacatgcctggttataa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17603942 |
gaaatgctggcaagacatgcctggttataa |
17603971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University